Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 2.2e-202 708.8 361 100.0
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.1e-67 260.4 642 33.3
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 7.9e-67 258.5 639 33.3
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 3.0e-66 256.5 621 33.2
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 5.1e-66 255.8 641 32.8
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 6.7e-66 255.4 632 34.3
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 1.9e-65 253.8 641 32.6
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 5.6e-65 252.3 641 32.9
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 5.6e-65 252.3 621 32.4
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 7.4e-65 251.9 646 33.7
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.6e-64 250.8 638 32.1
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.6e-64 250.8 626 34.0
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 2.8e-64 250.0 644 32.5
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.1e-64 248.4 621 31.9
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 1.8e-63 247.3 642 31.5
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 2.4e-63 246.9 646 32.4
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.1e-63 246.5 642 32.4
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 3.1e-63 246.5 620 32.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.3e-63 245.7 621 31.6
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.9e-63 245.4 621 31.6
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 9.0e-63 245.0 636 32.4
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 9.0e-63 245.0 642 31.8
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 2.0e-62 243.8 618 32.4
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.6e-62 243.4 639 31.1
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 4.5e-62 242.7 639 31.0
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 2.9e-61 240.0 615 31.7
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.8e-61 239.6 621 31.4
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.8e-61 239.6 621 31.4
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 3.8e-61 239.6 624 32.9
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 3.8e-61 239.6 635 32.8
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 6.5e-61 238.8 628 32.0
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.4e-61 238.4 639 30.8
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.1e-60 238.0 604 32.1
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.9e-60 237.3 640 32.8
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 1.9e-60 237.3 643 31.7
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 1.9e-60 237.3 644 32.1
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 3.2e-60 236.5 625 31.8
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 7.1e-60 235.3 612 32.4
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 1.2e-59 234.6 612 32.0
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.2e-59 234.6 625 31.5
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 2.1e-59 233.8 632 32.6
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 2.7e-59 233.4 619 31.8
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 3.5e-59 233.0 619 32.0
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 3.5e-59 233.0 638 30.9
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 6.0e-59 232.3 624 31.2
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.0e-58 231.5 612 31.4
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.3e-58 231.1 612 31.4
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.3e-58 231.1 611 31.8
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.3e-58 231.1 633 30.5
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.5e-57 227.6 626 30.8
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.5e-57 226.9 640 32.2
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 2.5e-57 226.9 604 31.3
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 4.3e-57 226.1 626 31.0
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 7.4e-57 225.3 688 30.5
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 9.6e-57 224.9 646 30.2
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 2.8e-56 223.4 617 31.0
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 3.7e-56 223.0 622 32.0
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 8.2e-56 221.9 633 30.8
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.1e-55 221.5 631 30.9
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-55 221.5 601 31.4
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 4.1e-55 219.5 616 31.5
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 4.1e-55 219.5 626 30.0
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 4.1e-55 219.5 608 31.6
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 5.3e-55 219.2 630 29.8
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 6.9e-55 218.8 640 30.6
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 9.0e-55 218.4 634 30.8
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 9.0e-55 218.4 642 30.4
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.2e-54 218.0 607 30.5
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 1.2e-54 218.0 641 29.6
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.6e-54 216.9 620 30.5
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.5e-54 216.1 615 30.6
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 4.5e-54 216.1 629 30.8
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 7.6e-54 215.3 638 29.9
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 1.0e-53 214.9 632 29.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 1.0e-53 214.9 616 31.0
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 1.3e-53 214.5 627 30.3
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.3e-53 214.5 622 30.1
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.7e-53 214.2 584 32.0
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 2.2e-53 213.8 616 30.8
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.9e-53 213.4 618 30.7
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 5.0e-53 212.6 612 30.1
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 5.0e-53 212.6 617 30.5
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 5.0e-53 212.6 617 30.5
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 6.5e-53 212.2 631 30.1
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.1e-52 211.5 630 29.7
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 1.4e-52 211.1 619 30.5
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 1.9e-52 210.7 649 29.4
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 1.9e-52 210.7 620 30.3
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 2.5e-52 210.3 620 29.7
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 4.2e-52 209.5 629 30.0
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 5.5e-52 209.1 626 30.7
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 9.3e-52 208.4 630 30.2
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 9.3e-52 208.4 626 30.7
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 2.1e-51 207.2 607 30.3
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 4.6e-51 206.1 601 29.5
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 1.0e-50 204.9 640 28.8
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 1.8e-50 204.1 639 29.0
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 3.0e-50 203.4 639 29.0
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 3.9e-50 203.0 639 28.8
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 8.7e-50 201.8 640 28.9
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 8.7e-50 201.8 613 29.7
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.5e-49 201.1 603 30.7
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 3.3e-49 199.9 632 29.1
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 3.3e-49 199.9 640 29.2
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 5.7e-49 199.1 641 28.1
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 5.7e-49 199.1 607 30.3
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 7.4e-49 198.7 632 29.0
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 7.4e-49 198.7 638 28.8
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 9.7e-49 198.4 632 29.3
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 9.7e-49 198.4 632 29.0
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 9.7e-49 198.4 629 28.6
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 1.3e-48 198.0 629 28.5
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.6e-48 197.6 653 28.6
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 2.8e-48 196.8 642 28.7
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 4.8e-48 196.1 638 28.7
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.1e-47 194.9 635 30.1
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.1e-47 194.9 653 29.1
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.8e-47 194.1 625 29.8
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 2.4e-47 193.7 631 28.5
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.1e-47 191.8 625 29.4
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 2.0e-46 190.7 615 29.3
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.4e-44 181.8 652 28.5
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.4e-44 181.8 432 32.4
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.4e-42 177.9 594 29.6
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.3e-42 177.2 268 44.0
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 1.1e-41 174.9 640 29.2
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 2.0e-41 174.1 674 26.4
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.7e-41 171.8 97 82.5
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.3e-40 171.4 404 30.9
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 1.3e-40 171.4 97 82.5
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 6.3e-40 169.1 620 28.2
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.1e-39 168.3 620 27.9
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 6.9e-39 165.6 574 29.3
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 1.7e-37 161.0 97 79.4
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 2.5e-36 157.1 632 26.6
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 4.2e-36 156.4 593 27.0
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 5.5e-36 156.0 263 44.9
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 9.4e-36 155.2 254 41.7
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 3.6e-35 153.3 603 27.2
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.8e-34 151.0 647 26.6
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 4.4e-33 146.4 97 70.1
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.9e-30 136.0 98 64.3
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.0e-29 135.2 98 64.3
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.0e-29 135.2 98 64.3
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.2e-29 134.0 98 63.3
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 4.2e-28 129.8 86 75.6
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 2.7e-27 127.1 98 59.2
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.7e-26 122.5 98 59.2
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.3e-25 120.2 90 66.7
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 4.4e-25 119.8 90 68.9
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 4.4e-25 119.8 90 68.9
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 5.7e-25 119.4 90 68.9
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 1.2e-22 111.7 87 65.5
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 2.7e-22 110.5 97 60.8
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 5.0e-21 106.3 79 59.5
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 9.4e-20 102.1 97 58.8
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 3.0e-18 97.1 52 84.6
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 4.0e-18 96.7 85 63.5
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.2e-17 95.1 52 82.7
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.8e-15 87.8 166 41.6
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 4.1e-15 86.7 86 52.3
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.0e-14 84.3 72 55.6
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.7e-14 84.0 78 53.8
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 2.7e-14 84.0 81 51.9
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 2.9e-13 80.5 45 80.0
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 2.9e-13 80.5 45 80.0
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 5.5e-12 76.3 42 81.0
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 5.5e-12 76.3 42 78.6
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-11 74.7 155 39.4
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.8e-10 71.2 50 68.0
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.8e-10 71.2 50 68.0
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 6.8e-10 69.3 104 36.5
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 9.8e-09 65.5 47 68.1
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 4.1e-07 60.1 45 57.8


User provided reference genes

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