Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 7.7e-55 216.9 106 100.0
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 1.7e-22 109.4 109 51.4
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 4.3e-21 104.8 109 51.4
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 2.8e-20 102.1 78 57.7
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 8.1e-20 100.5 82 58.5
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 1.1e-19 100.1 98 51.0
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 1.8e-19 99.4 99 50.5
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 2.3e-19 99.0 89 57.3
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 3.1e-19 98.6 109 49.5
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 2.6e-18 95.5 103 49.5
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 3.4e-18 95.1 111 49.5
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 4.4e-18 94.7 79 51.9
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 4.4e-18 94.7 65 61.5
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 9.8e-18 93.6 102 48.0
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 1.3e-17 93.2 78 55.1
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.7e-17 92.8 90 52.2
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 1.7e-17 92.8 107 46.7
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 2.9e-17 92.0 99 45.5
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 3.7e-17 91.7 95 46.3
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 4.9e-17 91.3 103 47.6
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 4.9e-17 91.3 103 47.6
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 4.9e-17 91.3 90 52.2
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.1e-16 90.1 103 47.6
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 1.1e-16 90.1 78 53.8
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 1.1e-16 90.1 97 45.4
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 1.4e-16 89.7 111 45.9
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.9e-16 89.4 103 46.6
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 2.4e-16 89.0 78 51.3
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.2e-16 88.6 103 46.6
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 4.1e-16 88.2 77 54.5
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 4.1e-16 88.2 77 54.5
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 2.7e-15 85.5 97 46.4
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 2.7e-15 85.5 77 53.2
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 2.7e-15 85.5 76 52.6
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 1.3e-14 83.2 103 44.7
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 2.3e-14 82.4 70 50.0
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 6.6e-14 80.9 85 44.7
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 1.1e-13 80.1 95 44.2
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 1.9e-13 79.3 81 49.4
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 3.3e-13 78.6 76 48.7
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 2.1e-12 75.9 79 46.8
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 6.2e-12 74.3 52 59.6
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 1.1e-11 73.6 59 55.9
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 1.1e-11 73.6 51 60.8
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 3.1e-11 72.0 64 46.9
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 3.1e-11 72.0 80 46.2
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 5.2e-11 71.2 68 47.1
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 1.2e-10 70.1 90 44.4
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 2.6e-10 68.9 67 44.8
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 3.4e-10 68.6 67 47.8
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 7.6e-10 67.4 55 45.5
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 7.6e-10 67.4 79 41.8
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 9.9e-10 67.0 51 52.9
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 9.9e-10 67.0 51 52.9
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 1.7e-09 66.2 51 52.9
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 1.7e-09 66.2 80 42.5
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 3.8e-09 65.1 51 52.9
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 4.9e-09 64.7 77 36.4
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 4.9e-09 64.7 59 45.8
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 4.9e-09 64.7 51 54.9
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 1.4e-08 63.2 74 41.9
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 1.9e-08 62.8 68 41.2
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 5.4e-08 61.2 81 37.0
ATR0579G097 Amborella trichopoda HOM05D007943 ORTHO05D010047 7.1e-08 60.8 90 34.4
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 7.1e-08 60.8 81 37.0
Zm00001eb073340 Zea mays HOM05D007943 ORTHO05D010047 3.5e-07 58.5 58 41.4
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 4.6e-07 58.2 55 45.5
Os03g0126900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 6.0e-07 57.8 44 50.0
FAN06G4370 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.0e-06 57.0 57 47.4
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 1.0e-06 57.0 40 57.5
Os04g0577375 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 1.3e-06 56.6 58 39.7
Os03g0315200 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 3.9e-06 55.1 43 46.5
Os08g0113900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 3.9e-06 55.1 47 46.8


User provided reference genes

Program Settings