Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 6.7e-67 257.3 138 100.0
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 6.5e-62 240.7 138 92.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.4e-58 228.0 138 87.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 9.7e-58 226.9 138 86.2
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.2e-57 225.7 139 87.1
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.8e-57 225.3 139 87.1
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.8e-57 225.3 139 87.1
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 3.7e-57 224.9 138 86.2
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 4.8e-57 224.6 138 84.8
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.3e-57 224.2 138 85.5
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 6.3e-57 224.2 138 84.8
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 6.3e-57 224.2 139 86.3
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.1e-56 223.4 138 84.8
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.1e-56 223.4 140 84.3
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.1e-56 223.4 139 86.3
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.4e-56 223.0 139 86.3
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.4e-56 223.0 139 85.6
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.1e-56 221.5 138 83.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 4.1e-56 221.5 140 85.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 9.1e-56 220.3 139 84.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 9.1e-56 220.3 139 84.9
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 9.1e-56 220.3 138 83.3
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.2e-55 219.9 138 83.3
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.5e-55 219.5 138 82.6
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.5e-55 219.5 138 82.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.5e-55 219.5 138 83.3
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.6e-55 218.8 138 84.1
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 2.6e-55 218.8 141 83.7
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 3.5e-55 218.4 139 83.5
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.0e-54 216.9 140 82.9
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.3e-54 216.5 152 78.9
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-54 216.5 139 83.5
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 2.2e-54 215.7 138 81.2
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 2.9e-54 215.3 141 83.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.8e-54 214.9 140 81.4
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 3.8e-54 214.9 138 81.9
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 5.0e-54 214.5 141 81.6
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 5.0e-54 214.5 139 83.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 5.0e-54 214.5 139 83.5
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 6.5e-54 214.2 138 83.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.5e-54 213.8 138 80.4
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.1e-53 213.4 139 82.7
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.1e-53 213.4 138 80.4
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.5e-53 213.0 138 82.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 2.5e-53 212.2 139 79.1
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 4.2e-53 211.5 140 80.7
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 7.2e-53 210.7 139 82.0
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 7.2e-53 210.7 140 80.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.6e-52 209.5 140 79.3
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.1e-52 209.1 140 77.1
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 81.2
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.6e-52 208.4 141 79.4
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 3.6e-52 208.4 143 76.2
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 4.7e-52 208.0 138 81.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.1e-52 207.6 148 78.4
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 8.0e-52 207.2 138 80.4
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.0e-52 207.2 138 78.3
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 8.0e-52 207.2 142 79.6
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.0e-51 206.8 147 77.6
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.0e-51 206.8 139 80.6
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.4e-51 206.5 137 77.4
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.4e-51 206.5 137 77.4
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.4e-51 206.5 139 79.9
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.8e-51 206.1 137 77.4
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.8e-51 206.1 137 78.1
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 3.0e-51 205.3 138 79.7
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 5.2e-51 204.5 137 77.4
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 5.2e-51 204.5 143 77.6
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 6.7e-51 204.1 138 76.1
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 6.7e-51 204.1 140 77.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 8.8e-51 203.8 138 76.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 8.8e-51 203.8 140 76.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.1e-50 203.4 143 76.9
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.0e-50 202.6 141 76.6
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.6e-50 202.2 138 75.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 2.6e-50 202.2 137 76.6
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.3e-50 201.8 140 77.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 3.3e-50 201.8 141 76.6
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 4.4e-50 201.4 140 76.4
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 4.4e-50 201.4 140 75.7
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 5.7e-50 201.1 138 77.5
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 7.4e-50 200.7 137 75.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 9.7e-50 200.3 138 76.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.7e-49 199.5 164 68.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.8e-48 196.1 160 67.5
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 4.1e-48 194.9 139 76.3
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.6e-47 192.2 151 69.5
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.6e-47 192.2 151 69.5
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.5e-47 191.4 141 75.2
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 7.7e-47 190.7 149 69.8
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.0e-46 190.3 112 89.3
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 71.4
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.9e-46 188.7 141 73.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.9e-46 188.7 138 71.0
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 6.5e-46 187.6 172 61.0
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 8.5e-46 187.2 140 72.1
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.2e-45 184.9 144 70.1
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 5.5e-45 184.5 152 67.8
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.5e-45 184.5 144 69.4
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 7.2e-45 184.1 146 69.2
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-44 183.3 155 66.5
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-44 183.3 155 66.5
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.2e-44 183.3 138 70.3
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.0e-43 180.3 176 59.1
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-43 179.9 134 72.4
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.4e-43 179.9 148 67.6
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.0e-42 176.0 113 83.2
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 3.4e-42 175.3 134 72.4
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.4e-42 175.3 136 66.2
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 5.7e-42 174.5 168 58.9
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.4e-40 169.9 138 63.0
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.0e-40 167.5 136 67.6
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 7.0e-40 167.5 113 80.5
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 5.9e-39 164.5 114 74.6
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 7.7e-39 164.1 126 75.4
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.9e-38 162.2 115 75.7
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.9e-38 162.2 166 53.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 2.5e-37 159.1 119 72.3
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.6e-36 156.4 139 62.6
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 6.8e-35 151.0 134 64.2
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 6.8e-35 151.0 134 67.2
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 6.8e-35 151.0 112 71.4
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 9.8e-34 147.1 136 60.3
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 4.1e-32 141.7 97 76.3
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 4.1e-32 141.7 167 53.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.5e-31 138.7 131 61.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 7.7e-31 137.5 111 69.4
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-30 136.7 118 63.6
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 6.6e-30 134.4 108 67.6
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 4.2e-29 131.7 135 55.6
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 4.2e-29 131.7 156 52.6
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 5.2e-27 124.8 94 72.3
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.9e-27 124.0 80 83.8
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.5e-26 123.2 81 81.5
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 9.8e-26 120.6 141 51.8
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.9e-25 118.2 80 78.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.3e-25 117.9 80 78.8
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 8.3e-25 117.5 85 72.9
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.1e-24 115.2 77 80.5
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.4e-24 114.8 76 82.9
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 9.2e-24 114.0 138 50.0
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-23 113.6 85 70.6
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.3e-21 105.5 69 75.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.2e-20 103.6 69 73.9
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.8e-20 102.4 69 76.8
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.1e-19 99.0 58 86.2
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 4.9e-17 91.7 82 62.2
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.1e-16 90.5 100 55.0
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.0e-15 86.3 57 80.7
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 2.0e-15 86.3 69 69.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-13 80.5 77 57.1
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-11 73.6 72 55.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.4e-11 73.6 72 55.6
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.4e-11 73.6 136 37.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.8e-11 73.2 58 65.5
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.1e-07 59.7 40 75.0
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 4.6e-07 58.5 42 69.0
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 7.8e-07 57.8 42 69.0
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 5.1e-06 55.1 37 70.3
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 5.1e-06 55.1 37 70.3


User provided reference genes

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