Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 9.0e-69 263.5 133 100.0
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 9.0e-69 263.5 133 100.0
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 8.8e-56 220.3 170 69.4
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.1e-55 219.9 170 71.8
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 5.7e-55 217.6 170 69.4
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 4.8e-54 214.5 170 70.6
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 4.8e-54 214.5 170 69.4
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 6.3e-54 214.2 170 70.0
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 8.2e-54 213.8 170 68.2
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.4e-53 213.0 170 68.2
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 1.4e-53 213.0 170 68.8
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 5.3e-53 211.1 170 67.1
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 6.9e-53 210.7 170 67.1
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 6.9e-53 210.7 170 68.2
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 6.9e-53 210.7 170 68.8
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 6.9e-53 210.7 170 68.8
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 9.1e-53 210.3 170 68.2
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 9.1e-53 210.3 170 68.2
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 9.1e-53 210.3 170 68.8
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 1.2e-52 209.9 170 68.2
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 1.2e-52 209.9 170 68.8
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 1.5e-52 209.5 170 67.1
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 1.5e-52 209.5 170 67.1
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 2.0e-52 209.1 170 66.5
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 4.5e-52 208.0 170 67.1
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 4.5e-52 208.0 170 67.1
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 4.5e-52 208.0 170 66.5
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 4.5e-52 208.0 169 67.5
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 5.9e-52 207.6 170 68.2
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 5.9e-52 207.6 170 68.2
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 5.9e-52 207.6 170 67.1
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 7.7e-52 207.2 170 67.6
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 7.7e-52 207.2 170 67.1
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 7.7e-52 207.2 170 67.1
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 1.0e-51 206.8 170 65.3
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 1.0e-51 206.8 170 67.6
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 1.0e-51 206.8 170 67.1
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 1.0e-51 206.8 170 67.6
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 1.3e-51 206.5 170 67.1
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.3e-51 206.5 170 65.9
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.7e-51 206.1 170 65.9
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.7e-51 206.1 170 65.9
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 2.2e-51 205.7 170 66.5
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 2.9e-51 205.3 170 67.1
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 2.9e-51 205.3 170 67.1
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 5.0e-51 204.5 170 66.5
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 5.0e-51 204.5 170 65.9
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 6.5e-51 204.1 170 66.5
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 6.5e-51 204.1 170 65.9
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 8.5e-51 203.8 170 65.9
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.1e-50 203.4 170 65.3
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.1e-50 203.4 170 64.7
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.1e-50 203.4 170 64.7
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 1.1e-50 203.4 170 65.3
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 1.4e-50 203.0 170 67.1
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.4e-50 203.0 170 64.7
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 1.9e-50 202.6 170 66.5
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 1.9e-50 202.6 170 65.9
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 1.9e-50 202.6 170 65.3
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 3.2e-50 201.8 170 65.9
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.2e-50 201.8 170 64.1
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 3.2e-50 201.8 170 65.9
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 3.2e-50 201.8 169 65.7
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 4.2e-50 201.4 170 64.7
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 5.5e-50 201.1 179 64.2
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 9.4e-50 200.3 169 65.1
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 1.2e-49 199.9 170 64.7
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 1.2e-49 199.9 170 64.7
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 1.2e-49 199.9 170 64.7
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 2.1e-49 199.1 170 64.7
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 2.7e-49 198.7 169 65.1
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 2.7e-49 198.7 170 62.9
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 3.6e-49 198.4 170 63.5
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 3.6e-49 198.4 170 64.7
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 4.7e-49 198.0 170 63.5
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 4.7e-49 198.0 170 63.5
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 6.1e-49 197.6 170 62.9
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 7.9e-49 197.2 170 62.9
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 1.8e-48 196.1 170 63.5
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 1.8e-48 196.1 169 65.7
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 3.0e-48 195.3 170 62.9
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 3.0e-48 195.3 170 62.9
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 3.9e-48 194.9 170 63.5
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 3.9e-48 194.9 170 63.5
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 3.9e-48 194.9 170 62.9
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 3.9e-48 194.9 179 60.3
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 6.7e-48 194.1 170 63.5
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 6.7e-48 194.1 170 63.5
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 1.1e-47 193.4 170 62.9
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.1e-47 193.4 170 62.9
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 2.0e-47 192.6 170 62.4
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 2.0e-47 192.6 170 62.4
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 2.0e-47 192.6 170 62.4
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 2.6e-47 192.2 170 62.9
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 2.6e-47 192.2 170 62.4
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 2.6e-47 192.2 170 62.4
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 3.3e-47 191.8 170 62.4
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 3.3e-47 191.8 170 62.4
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 3.3e-47 191.8 170 62.4
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 4.4e-47 191.4 170 62.9
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.4e-47 191.4 170 62.4
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.4e-47 191.4 170 62.4
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.4e-47 191.4 170 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 7.4e-47 190.7 170 60.6
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 7.4e-47 190.7 170 60.6
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 9.7e-47 190.3 170 61.8
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.7e-47 190.3 170 61.8
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 9.7e-47 190.3 170 60.6
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 1.3e-46 189.9 170 61.8
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 1.7e-46 189.5 170 60.6
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 2.2e-46 189.1 170 60.0
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 2.8e-46 188.7 170 60.6
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 2.8e-46 188.7 170 60.6
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 2.8e-46 188.7 170 60.6
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 3.7e-46 188.3 170 60.6
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 3.7e-46 188.3 193 56.0
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 4.8e-46 188.0 170 61.2
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 6.3e-46 187.6 170 61.2
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 8.2e-46 187.2 170 61.2
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 1.1e-45 186.8 170 60.6
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 1.8e-45 186.0 189 57.7
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 2.4e-45 185.7 170 58.8
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 4.1e-45 184.9 168 60.1
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 4.1e-45 184.9 170 60.0
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 1.5e-44 183.0 170 59.4
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 5.9e-44 181.0 170 58.2
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 9.4e-42 173.7 113 76.1
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 3.6e-41 171.8 113 75.2
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 5.2e-40 167.9 109 76.1
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 3.5e-36 155.2 143 60.1
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 5.9e-36 154.5 169 50.3
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 7.2e-34 147.5 170 49.4
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 4.7e-33 144.8 171 47.4
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 5.2e-32 141.4 97 72.2
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 8.8e-32 140.6 146 54.1
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 2.6e-31 139.0 102 71.6
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 1.7e-30 136.3 130 59.2
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 4.8e-30 134.8 77 85.7
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 8.3e-30 134.0 79 82.3
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 7.0e-29 131.0 119 63.0
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.7e-28 129.0 75 82.7
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 5.0e-27 124.8 87 74.7
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 3.0e-24 115.5 114 61.4
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.7e-22 109.8 126 52.4
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 3.5e-20 102.1 73 69.9
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 5.9e-20 101.3 59 84.7
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 2.8e-17 92.4 189 37.6
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 1.4e-16 90.1 57 78.9
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.7e-14 83.2 50 78.0
C05p12750 Brassica napus HOM05D004220 ORTHO05D040138 6.4e-06 54.7 27 96.3
CBR_g69675 Chara braunii HOM05D004220 ORTHO05D040138 8.3e-06 54.3 27 92.6


User provided reference genes

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