Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 3.1e-81 305.1 151 100.0
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.3e-26 123.6 130 44.6
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 6.9e-25 117.9 130 43.1
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 5.9e-24 114.8 136 42.6
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 1.7e-23 113.2 154 40.9
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 3.8e-23 112.1 140 43.6
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 1.1e-22 110.5 138 44.9
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 7.2e-22 107.8 133 42.9
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.2e-21 107.1 130 43.1
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.6e-21 106.7 151 43.0
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 1.6e-21 106.7 137 41.6
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.1e-21 106.3 154 40.3
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 4.7e-21 105.1 156 39.1
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 1.0e-20 104.0 132 41.7
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.3e-20 102.8 156 38.5
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 5.2e-20 101.7 134 41.8
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 8.8e-20 100.9 151 39.7
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 3.3e-19 99.0 144 38.2
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 4.4e-19 98.6 158 37.3
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 4.4e-19 98.6 133 42.1
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 7.4e-19 97.8 135 39.3
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 3.7e-18 95.5 68 58.8
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 2.4e-17 92.8 130 39.2
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 4.1e-17 92.0 159 39.0
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 1.2e-16 90.5 144 40.3
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 2.6e-16 89.4 136 39.7
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 3.5e-16 89.0 142 40.1
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 1.3e-15 87.0 109 46.8
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 1.7e-15 86.7 143 35.0
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 2.2e-15 86.3 133 37.6
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 2.2e-15 86.3 133 40.6
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 2.9e-15 85.9 129 40.3
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 3.8e-15 85.5 97 43.3
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 5.0e-15 85.1 130 36.9
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 6.5e-15 84.7 138 34.8
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.9e-14 83.2 127 37.0
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.9e-14 83.2 132 37.9
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.5e-14 82.8 142 38.0
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 3.2e-14 82.4 133 36.8
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 3.2e-14 82.4 131 40.5
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 9.4e-14 80.9 132 40.2
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 1.6e-13 80.1 134 33.6
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 1.6e-13 80.1 140 37.1
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 1.6e-13 80.1 127 36.2
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 2.1e-13 79.7 130 37.7
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 4.7e-13 78.6 74 48.6
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 6.1e-13 78.2 135 32.6
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 6.1e-13 78.2 129 39.5
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 1.0e-12 77.4 135 33.3
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.4e-12 77.0 68 44.1
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.4e-12 77.0 68 44.1
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 2.3e-12 76.3 136 33.1
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 3.0e-12 75.9 138 33.3
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 3.0e-12 75.9 132 34.8
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 3.0e-12 75.9 136 37.5
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 3.0e-12 75.9 131 35.9
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 3.0e-12 75.9 131 35.9
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 3.0e-12 75.9 137 32.8
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 6.7e-12 74.7 132 37.9
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 8.8e-12 74.3 139 33.1
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 1.5e-11 73.6 108 41.7
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 2.0e-11 73.2 133 32.3
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 2.0e-11 73.2 108 40.7
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 2.0e-11 73.2 134 33.6
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 5.7e-11 71.6 132 31.1
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 5.7e-11 71.6 132 31.1
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 5.7e-11 71.6 142 35.2
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 9.7e-11 70.9 66 47.0
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 9.7e-11 70.9 144 35.4
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 1.3e-10 70.5 65 46.2
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 1.7e-10 70.1 96 41.7
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 1.7e-10 70.1 72 43.1
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 2.2e-10 69.7 72 45.8
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 2.2e-10 69.7 72 45.8
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 2.8e-10 69.3 65 44.6
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 2.8e-10 69.3 72 47.2
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 3.7e-10 68.9 146 30.1
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 3.7e-10 68.9 133 32.3
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 3.7e-10 68.9 73 47.9
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 3.7e-10 68.9 72 45.8
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 6.3e-10 68.2 141 29.8
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 6.3e-10 68.2 127 31.5
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 6.3e-10 68.2 127 31.5
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 6.3e-10 68.2 72 40.3
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 8.2e-10 67.8 130 35.4
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 1.1e-09 67.4 149 30.2
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 1.4e-09 67.0 63 49.2
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 1.8e-09 66.6 93 39.8
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 2.4e-09 66.2 133 34.6
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 2.4e-09 66.2 152 31.6
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 3.1e-09 65.9 128 32.8
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 3.1e-09 65.9 118 36.4
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 4.1e-09 65.5 141 29.1
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 4.1e-09 65.5 141 29.1
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 4.1e-09 65.5 109 38.5
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 4.1e-09 65.5 129 32.6
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 5.3e-09 65.1 72 41.7
SGA_v2.0_scaffold5G03086 Striga asiatica HOM05D007511 ORTHO05D003753 5.3e-09 65.1 102 39.2
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 7.0e-09 64.7 73 43.8
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 7.0e-09 64.7 73 43.8
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 9.1e-09 64.3 141 28.4
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 9.1e-09 64.3 68 44.1
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 9.1e-09 64.3 72 43.1
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 1.6e-08 63.5 72 43.1
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 1.6e-08 63.5 72 38.9
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 1.6e-08 63.5 67 43.3
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 1.6e-08 63.5 148 29.7
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 2.0e-08 63.2 130 34.6
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 2.0e-08 63.2 72 38.9
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 2.0e-08 63.2 72 41.7
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 2.7e-08 62.8 124 33.1
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 2.7e-08 62.8 128 32.0
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 3.5e-08 62.4 153 30.1
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 3.5e-08 62.4 72 37.5
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 4.5e-08 62.0 141 27.7
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 4.5e-08 62.0 141 27.7
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 5.9e-08 61.6 176 27.8
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 5.9e-08 61.6 134 31.3
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 5.9e-08 61.6 72 43.1
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 7.7e-08 61.2 72 40.3
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 7.7e-08 61.2 72 37.5
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 7.7e-08 61.2 69 42.0
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 1.0e-07 60.8 72 40.3
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 1.7e-07 60.1 72 37.5
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 1.7e-07 60.1 69 40.6
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 2.9e-07 59.3 68 39.7
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 2.9e-07 59.3 68 39.7
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.9e-07 59.3 60 40.0
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 2.9e-07 59.3 75 36.0
Aqoxy6G00297 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 3.8e-07 58.9 151 28.5
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 3.8e-07 58.9 68 39.7
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 3.8e-07 58.9 68 39.7
QL04p052194 Quercus lobata HOM05D007511 ORTHO05D003753 3.8e-07 58.9 96 41.7
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 5.0e-07 58.5 61 49.2
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 6.5e-07 58.2 72 36.1
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 6.5e-07 58.2 64 40.6
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 6.5e-07 58.2 64 40.6
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 6.5e-07 58.2 73 37.0
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 8.5e-07 57.8 68 38.2
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 8.5e-07 57.8 177 26.6
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 8.5e-07 57.8 72 36.1
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 1.1e-06 57.4 60 43.3
Gohir.D11G061300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 1.1e-06 57.4 60 43.3
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.5e-06 57.0 132 29.5
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 1.5e-06 57.0 72 36.1
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 1.5e-06 57.0 72 36.1
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 1.5e-06 57.0 64 39.1
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 1.5e-06 57.0 106 33.0
SGA_v2.0_scaffold95G28750 Striga asiatica HOM05D007511 ORTHO05D003753 1.5e-06 57.0 100 35.0
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 1.9e-06 56.6 72 36.1
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 1.9e-06 56.6 72 36.1
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 2.5e-06 56.2 60 41.7
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 3.2e-06 55.8 129 30.2
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.2e-06 55.5 129 30.2
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 5.5e-06 55.1 70 34.3
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 7.2e-06 54.7 64 43.8
CSS0038510 Camellia sinensis var. sinensis HOM05D007511 ORTHO05D003753 7.2e-06 54.7 74 41.9
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 9.4e-06 54.3 150 32.7
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 9.4e-06 54.3 99 37.4
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 9.4e-06 54.3 94 30.9


User provided reference genes

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