Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 0.0e+00 1411.0 714 100.0
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 0.0e+00 1078.5 721 78.4
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 3.7e-225 785.4 723 61.0
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 3.9e-219 765.4 705 60.3
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.6e-217 760.0 883 50.2
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 3.4e-215 752.3 850 50.9
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.5e-198 694.9 734 55.2
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 3.2e-189 666.0 777 52.3
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 7.5e-186 654.8 725 53.2
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 3.3e-173 612.8 754 49.3
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 9.5e-173 611.3 733 50.5
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 4.7e-172 609.0 738 50.0
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 1.8e-171 607.1 742 49.2
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 2.8e-169 599.7 733 49.9
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 1.6e-164 583.9 731 50.6
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 4.0e-163 579.3 746 48.3
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 1.3e-153 547.7 734 47.0
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 7.1e-152 542.0 727 46.5
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 1.6e-151 540.8 746 47.1
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 2.7e-151 540.0 728 46.2
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.3e-149 532.7 690 48.8
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 8.1e-148 528.5 729 46.0
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 1.3e-145 521.2 728 45.9
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 3.2e-144 516.5 730 47.0
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.7e-143 513.5 746 44.5
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 9.6e-141 505.0 749 46.2
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 2.1e-140 503.8 729 45.3
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 2.8e-140 503.4 727 45.1
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 2.4e-139 500.4 729 45.3
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 3.1e-139 500.0 729 46.2
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 1.9e-136 490.7 751 45.1
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 3.2e-136 490.0 746 45.3
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 4.2e-136 489.6 751 41.8
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 2.7e-135 486.9 742 44.2
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 1.3e-134 484.6 746 43.8
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 3.9e-134 483.0 747 44.2
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 1.3e-132 478.0 730 44.0
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 1.6e-132 477.6 742 43.1
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 1.5e-130 471.1 728 44.2
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 9.9e-130 468.4 752 44.9
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.2e-127 461.5 732 43.3
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 2.7e-127 460.3 751 43.4
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.3e-126 458.0 751 43.3
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.7e-126 457.6 727 43.1
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 3.9e-126 456.4 741 41.7
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 5.1e-126 456.1 804 40.8
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 5.6e-125 452.6 751 43.1
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 2.1e-124 450.7 730 40.5
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 2.1e-124 450.7 730 41.2
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 2.4e-123 447.2 733 42.7
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 2.4e-123 447.2 736 41.7
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 5.3e-123 446.0 737 41.4
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.2e-121 440.7 730 41.8
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 2.2e-121 440.7 771 40.5
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 9.3e-120 435.3 736 41.4
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 3.0e-118 430.3 736 41.2
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.8e-115 421.0 724 40.5
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.2e-114 418.3 743 42.7
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 7.6e-114 415.6 722 40.3
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 6.5e-113 412.5 729 39.9
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 6.5e-113 412.5 731 38.9
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.5e-112 410.6 748 42.2
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.2e-112 410.2 745 41.5
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.1e-111 407.5 746 42.1
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 5.1e-110 402.9 746 41.4
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 8.2e-108 395.6 720 39.3
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 6.9e-107 392.5 748 38.1
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 2.9e-105 387.1 741 40.6
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 5.0e-105 386.3 722 38.0
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 6.5e-105 386.0 736 37.0
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 4.6e-103 379.8 739 36.8
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 1.1e-88 332.0 733 36.6
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.6e-87 328.2 742 35.7
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 2.4e-83 314.3 703 35.3
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 9.1e-83 312.4 721 35.2
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 1.9e-80 304.7 726 36.2
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 2.5e-80 304.3 730 36.7
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 4.2e-80 303.5 730 36.7
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 2.7e-79 300.8 695 35.5
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 2.7e-79 300.8 678 33.9
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 6.7e-78 296.2 722 36.0
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.5e-77 295.0 765 34.0
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 7.5e-77 292.7 733 35.9
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 2.8e-76 290.8 728 35.2
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 3.7e-76 290.4 726 35.0
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 4.8e-76 290.0 740 33.2
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 4.8e-76 290.0 730 34.7
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 6.3e-76 289.7 771 34.6
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.1e-75 288.9 756 33.3
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.4e-75 288.5 696 35.3
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 2.4e-75 287.7 738 35.4
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 5.3e-75 286.6 744 34.8
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 1.9e-72 278.1 727 34.9
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 2.5e-72 277.7 767 33.0
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.5e-72 277.7 696 34.5
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 2.5e-72 277.7 727 33.6
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 2.5e-72 277.7 722 34.9
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 1.7e-68 265.0 763 33.2
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 2.2e-68 264.6 696 32.2
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 3.1e-67 260.8 673 33.4
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 7.0e-67 259.6 697 34.4
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 7.0e-67 259.6 785 32.9
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 2.0e-66 258.1 769 32.9
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 2.0e-66 258.1 771 31.8
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 3.5e-66 257.3 296 53.0
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 4.5e-66 256.9 720 35.0
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 6.5e-65 253.1 770 32.6
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 1.0e-62 245.7 779 31.2
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.5e-61 241.9 706 30.9
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 9.8e-61 239.2 764 31.4
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 1.3e-60 238.8 855 32.0
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 1.7e-57 228.4 725 32.0
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 5.4e-51 206.8 779 28.5
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 5.4e-51 206.8 721 30.1
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 7.8e-50 203.0 756 30.6
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 1.9e-48 198.4 755 30.5
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 1.9e-48 198.4 781 30.7
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 1.9e-48 198.4 781 30.7
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 2.5e-48 198.0 757 30.1
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 3.6e-47 194.1 756 29.9
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 8.0e-47 193.0 754 30.4
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 8.0e-47 193.0 670 31.5
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 2.0e-45 188.3 558 33.5
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.2e-44 184.9 713 30.2
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 8.3e-44 183.0 154 64.3
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 3.9e-41 174.1 778 29.4
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 3.9e-41 174.1 778 29.4
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 5.6e-40 170.2 858 26.2
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 5.4e-35 153.7 122 62.3
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 5.2e-30 137.1 746 26.7
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 9.9e-29 132.9 752 24.9
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.5e-24 119.0 752 27.4
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 2.9e-20 104.8 758 23.9
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 7.1e-19 100.1 257 31.5
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 2.2e-12 78.6 88 45.5
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 8.4e-12 76.6 223 32.7
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.0e-09 69.7 90 44.4
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 5.1e-09 67.4 56 60.7
Zm00001eb243360 Zea mays HOM05D019841 ORTHO05D037008 1.9e-08 65.5 146 32.9


User provided reference genes

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