Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.9e-55 218.4 114 100.0
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 4.1e-54 214.5 114 98.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.9e-19 99.4 98 61.2
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 4.3e-19 98.2 105 60.0
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 3.6e-18 95.1 114 52.6
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 6.2e-18 94.4 94 60.6
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.1e-17 93.6 99 59.6
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-17 93.6 103 56.3
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.1e-17 93.6 92 59.8
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.1e-17 93.6 97 56.7
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-17 93.2 105 54.3
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.3e-17 91.3 95 56.8
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 5.3e-17 91.3 102 56.9
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.2e-16 90.1 91 56.0
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.5e-16 89.7 94 57.4
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.5e-16 89.7 98 57.1
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.0e-16 89.4 85 62.4
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 3.4e-16 88.6 101 52.5
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 4.5e-16 88.2 92 55.4
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.8e-16 87.8 101 56.4
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 5.8e-16 87.8 105 51.4
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 9.9e-16 87.0 91 54.9
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 9.9e-16 87.0 91 53.8
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-15 86.7 100 55.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.2e-15 85.9 89 58.4
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 2.9e-15 85.5 93 60.2
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.8e-15 85.1 94 57.4
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 4.9e-15 84.7 102 52.0
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 4.9e-15 84.7 94 56.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 4.9e-15 84.7 82 61.0
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.4e-15 84.3 102 51.0
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.4e-15 84.3 91 58.2
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 6.4e-15 84.3 94 56.4
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 8.4e-15 84.0 95 52.6
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.1e-14 83.6 94 54.3
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-14 83.6 89 57.3
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.1e-14 83.6 95 56.8
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.4e-14 83.2 92 57.6
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.9e-14 82.8 91 57.1
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.4e-14 82.4 94 53.2
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 2.4e-14 82.4 93 58.1
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 3.2e-14 82.0 91 56.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.2e-14 82.0 85 62.4
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.2e-14 82.0 95 54.7
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 5.4e-14 81.3 104 48.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 9.3e-14 80.5 104 50.0
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.2e-13 80.1 91 56.0
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.6e-13 79.7 97 55.7
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.1e-13 79.3 105 51.4
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.7e-13 79.0 102 49.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.7e-13 79.0 89 55.1
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.7e-13 79.0 91 56.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 3.5e-13 78.6 115 47.8
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 3.5e-13 78.6 102 49.0
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.5e-13 78.6 102 49.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 3.5e-13 78.6 97 50.5
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 3.5e-13 78.6 106 51.9
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 4.6e-13 78.2 100 50.0
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.0e-13 77.8 104 52.9
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.0e-13 77.8 93 51.6
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 7.9e-13 77.4 79 60.8
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 7.9e-13 77.4 107 46.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.3e-12 76.6 103 47.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.8e-12 76.3 86 53.5
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.8e-12 76.3 94 48.9
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.0e-12 75.5 95 55.8
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 3.9e-12 75.1 93 54.8
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 3.9e-12 75.1 95 56.8
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 6.7e-12 74.3 90 52.2
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.7e-12 74.3 97 49.5
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.1e-11 73.6 101 46.5
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.9e-11 72.8 108 48.1
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.9e-11 72.8 89 49.4
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.9e-11 72.8 95 48.4
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.5e-11 72.4 110 46.4
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.5e-11 72.4 68 64.7
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 5.6e-11 71.2 77 58.4
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 5.6e-11 71.2 92 46.7
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.6e-11 71.2 91 49.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.6e-11 71.2 107 41.1
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 7.4e-11 70.9 72 61.1
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 9.6e-11 70.5 88 47.7
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.3e-10 70.1 97 50.5
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.6e-10 69.7 100 51.0
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 2.1e-10 69.3 102 49.0
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.1e-10 69.3 103 48.5
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 2.1e-10 69.3 103 47.6
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.6e-10 68.6 88 48.9
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 3.6e-10 68.6 91 46.2
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 4.8e-10 68.2 68 58.8
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 6.2e-10 67.8 83 54.2
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 6.2e-10 67.8 92 45.7
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 6.2e-10 67.8 92 45.7
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 6.2e-10 67.8 92 45.7
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 6.2e-10 67.8 88 46.6
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.2e-10 67.8 103 47.6
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 8.1e-10 67.4 68 57.4
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.1e-09 67.0 97 50.5
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.4e-09 66.6 81 49.4
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.4e-09 66.6 111 45.0
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.8e-09 66.2 88 44.3
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.8e-09 66.2 88 44.3
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.8e-09 66.2 76 53.9
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.8e-09 66.2 116 38.8
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.8e-09 66.2 102 47.1
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.4e-09 65.9 88 47.7
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-09 65.5 90 45.6
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.1e-09 65.5 82 52.4
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 4.0e-09 65.1 90 44.4
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.0e-09 65.1 84 51.2
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 6.9e-09 64.3 92 43.5
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 6.9e-09 64.3 92 46.7
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 6.9e-09 64.3 92 46.7
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 9.0e-09 63.9 90 44.4
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.2e-08 63.5 88 45.5
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.5e-08 63.2 93 48.4
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.0e-08 62.8 90 43.3
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.0e-08 62.8 88 43.2
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.0e-08 62.8 88 43.2
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 4.5e-08 61.6 83 43.4
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 5.8e-08 61.2 106 37.7
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 7.6e-08 60.8 70 55.7
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.6e-08 60.8 99 42.4
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 9.9e-08 60.5 53 60.4
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 1.3e-07 60.1 71 53.5
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.3e-07 60.1 47 66.0
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-07 60.1 85 44.7
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 96 43.8
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-07 60.1 73 49.3
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.7e-07 59.7 89 44.9
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.7e-07 59.7 104 39.4
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-07 59.3 96 46.9
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-07 59.3 88 40.9
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 88 40.9
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 2.2e-07 59.3 88 40.9
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.2e-07 59.3 41 75.6
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-07 58.9 88 44.3
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.8e-07 58.5 90 42.2
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 3.8e-07 58.5 114 36.0
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.8e-07 58.5 68 51.5
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.9e-07 58.2 98 41.8
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 8.4e-07 57.4 89 44.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 8.4e-07 57.4 67 52.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-06 57.0 68 51.5
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.1e-06 57.0 80 48.8
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.1e-06 57.0 103 38.8
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.4e-06 56.6 66 50.0
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.4e-06 56.6 96 44.8
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.9e-06 56.2 97 42.3
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 3.2e-06 55.5 103 38.8
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 4.2e-06 55.1 79 48.1
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 5.5e-06 54.7 93 44.1
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 5.5e-06 54.7 66 53.0
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 5.5e-06 54.7 82 45.1


User provided reference genes

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