Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2973 Trochodendron aralioides HOM05D000278 ORTHO05D416172 5.5e-40 167.2 83 100.0
Actinidia17629 Actinidia chinensis HOM05D000278 ORTHO05D004371 2.3e-14 82.0 113 48.7
ATR0564G541 Amborella trichopoda HOM05D000278 ORTHO05D004371 2.8e-12 75.1 52 78.8
CDE05G1773 Ceratophyllum demersum HOM05D000278 ORTHO05D004371 3.7e-12 74.7 52 76.9
Duzib133G0655 Durio zibethinus HOM05D000278 ORTHO05D004371 1.1e-11 73.2 52 73.1
ATR0564G545 Amborella trichopoda HOM05D000278 ORTHO05D004371 1.8e-11 72.4 52 76.9
ATR0665G149 Amborella trichopoda HOM05D000278 ORTHO05D004371 1.8e-11 72.4 52 76.9
CSS0001008 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 1.8e-11 72.4 52 75.0
CSS0025301 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 1.8e-11 72.4 52 75.0
AUR62001562 Chenopodium quinoa HOM05D000278 ORTHO05D004371 2.4e-11 72.0 52 76.9
AUR62020221 Chenopodium quinoa HOM05D000278 ORTHO05D004371 2.4e-11 72.0 52 76.9
Nn3g17785 Nelumbo nucifera HOM05D000278 ORTHO05D004371 2.4e-11 72.0 52 76.9
Hund20953 Selenicereus undatus HOM05D000278 ORTHO05D004371 2.4e-11 72.0 52 76.9
Actinidia26297 Actinidia chinensis HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
CSS0032545 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
CiPaw.03G060500 Carya illinoinensis HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
ClCG11G005410 Citrullus lanatus HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
Cc07_g08910 Coffea canephora HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
MELO3C022094.2 Cucumis melo HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
CsaV3_5G039190 Cucumis sativus L. HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
Dinv33932 Davidia involucrata HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
Dinv34840 Davidia involucrata HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
ECA232G3983 Erigeron canadensis HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
Manes.01G108900 Manihot esculenta HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
Manes.02G067400 Manihot esculenta HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
PGR004G1971 Punica granatum HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
Sed0004153 Sechium edule HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
Sed0012233 Sechium edule HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
TWI53G0964 Tripterygium wilfordii HOM05D000278 ORTHO05D004371 3.1e-11 71.6 52 75.0
MSTRG.5379 Avicennia marina HOM05D000278 ORTHO05D004371 4.1e-11 71.2 52 75.0
DCAR_025918 Daucus carota HOM05D000278 ORTHO05D004371 4.1e-11 71.2 52 73.1
Hma1.2p1_0550F.1_g177310 Hydrangea macrophylla HOM05D000278 ORTHO05D004371 4.1e-11 71.2 46 82.6
SEGI_11536 Sequoiadendron giganteum HOM05D000278 ORTHO05D004371 4.1e-11 71.2 52 75.0
TAR374G0266 Trochodendron aralioides HOM05D000278 ORTHO05D004371 4.1e-11 71.2 46 82.6
Haze_14140 Corylus avellana HOM05D000278 ORTHO05D004371 5.4e-11 70.9 46 82.6
Duzib268G1391 Durio zibethinus HOM05D000278 ORTHO05D004371 5.4e-11 70.9 52 73.1
Migut.L00307 Erythranthe guttata HOM05D000278 ORTHO05D004371 5.4e-11 70.9 52 76.9
Os05g0147400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004371 5.4e-11 70.9 52 75.0
QL02p051602 Quercus lobata HOM05D000278 ORTHO05D004371 5.4e-11 70.9 52 75.0
SalBow5G3863 Salvia bowleyana HOM05D000278 ORTHO05D004371 5.4e-11 70.9 52 75.0
PGSC0003DMG400024180 Solanum tuberosum HOM05D000278 ORTHO05D004371 5.4e-11 70.9 52 73.1
Thecc.03G064200 Theobroma cacao HOM05D000278 ORTHO05D004371 5.4e-11 70.9 52 75.0
Zm00001eb111720 Zea mays HOM05D000278 ORTHO05D004371 5.4e-11 70.9 52 75.0
Gohir.A12G271300 Gossypium hirsutum HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 73.1
Gohir.D12G271900 Gossypium hirsutum HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 73.1
Gorai.008G292300 Gossypium raimondii HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 73.1
HanXRQChr15g0483021 Helianthus annuus HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 73.1
MBI10_g05705_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 75.0
Nn4g23776 Nelumbo nucifera HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 75.0
Potri.004G101500 Populus trichocarpa HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 73.1
Sabra04G0078800 Salix brachista HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 73.1
TWI74G0032 Tripterygium wilfordii HOM05D000278 ORTHO05D004371 7.0e-11 70.5 52 75.0
Cpa.g.sc179.12 Carica papaya HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 73.1
ECA246G0784 Erigeron canadensis HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 73.1
HanXRQChr11g0324991 Helianthus annuus HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 71.2
Lj4A194T33 Lonicera japonica HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 71.2
Nitab4.5_0001569g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 73.1
Nitab4.5_0002288g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 73.1
Nitab4.5_0005737g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 73.1
Nitab4.5_0005961g0020 Nicotiana tabacum HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 73.1
Peaxi162Scf00518g00722 Petunia axillaris HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 73.1
Prupe.3G238800 Prunus persica HOM05D000278 ORTHO05D004371 9.1e-11 70.1 52 73.1
Aa31LG11G13540 Aethionema arabicum HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
Ah.01g008100 Amaranthus hybridus HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
Aqoxy3G03935 Aquilegia oxysepala HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 71.2
Ciclev10011450m.g Citrus clementina HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 71.2
COL.COLO4_16182 Corchorus olitorius HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 71.2
HanXRQChr14g0438721 Helianthus annuus HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
Lsat_1_v5_gn_4_153000 Lactuca sativa HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
Lj2C446G3 Lonicera japonica HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 71.2
MD09G1086000 Malus domestica HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
MD17G1104900 Malus domestica HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
Peaxi162Scf00501g00127 Petunia axillaris HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 75.0
Rhsim10G0063000 Rhododendron simsii HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
SGA_v2.0_scaffold13G06449 Striga asiatica HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
SGA_v2.0_scaffold250G44997 Striga asiatica HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
THA.LOC104827154 Tarenaya hassleriana HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
GSVIVG01031067001 Vitis vinifera HOM05D000278 ORTHO05D004371 1.2e-10 69.7 52 73.1
Oeu030779.1 Olea europaea HOM05D000278 ORTHO05D004371 1.6e-10 69.3 52 73.1
QL07p018371 Quercus lobata HOM05D000278 ORTHO05D004371 1.6e-10 69.3 52 73.1
Sc11g0008250 Simmondsia chinensis HOM05D000278 ORTHO05D004371 1.6e-10 69.3 52 73.1
Solyc02g063090.3 Solanum lycopersicum HOM05D000278 ORTHO05D004371 1.6e-10 69.3 52 71.2
Sopen02g014170 Solanum pennellii HOM05D000278 ORTHO05D004371 1.6e-10 69.3 52 71.2
VMungo1383G1335 Vigna mungo HOM05D000278 ORTHO05D004371 1.6e-10 69.3 52 71.2
AL6G26950 Arabidopsis lyrata HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
AT5G16070 Arabidopsis thaliana HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
BcaC04g18911 Brassica carinata HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 73.1
C09p60960 Brassica napus HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 73.1
BolC9t58943H Brassica oleracea HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 73.1
Carub.0006s1426 Capsella rubella HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
Carub.0055s0007 Capsella rubella HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
CAN.G625.1 Capsicum annuum HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
CARHR197240 Cardamine hirsuta HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
Cfa007938 Carpinus fangiana HOM05D000278 ORTHO05D004371 2.0e-10 68.9 46 80.4
Oeu052986.1 Olea europaea HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
PGSC0003DMG400012675 Solanum tuberosum HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
Thecc.04G136300 Theobroma cacao HOM05D000278 ORTHO05D004371 2.0e-10 68.9 52 71.2
Oeu052987.1 Olea europaea HOM05D000278 ORTHO05D004371 2.7e-10 68.6 52 71.2
THA.LOC104803003 Tarenaya hassleriana HOM05D000278 ORTHO05D004371 2.7e-10 68.6 52 71.2
TPR.G15574 Trifolium pratense HOM05D000278 ORTHO05D004371 2.7e-10 68.6 52 71.2
TPR.G9697 Trifolium pratense HOM05D000278 ORTHO05D004371 2.7e-10 68.6 52 71.2
unitig_747.g21816 Utricularia gibba HOM05D000278 ORTHO05D004371 2.7e-10 68.6 46 82.6
Aa31LG5G13030 Aethionema arabicum HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
AL3G11890 Arabidopsis lyrata HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
BcaC05g30369 Brassica carinata HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
A05p44430 Brassica napus HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
C09p75800 Brassica napus HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
BraA06t23298Z Brassica rapa HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
Carub.0003s0164 Capsella rubella HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
CARHR076530 Cardamine hirsuta HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
Thhalv10020484m.g Eutrema salsugineum HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
FAN26G1581 Fragaria x ananassa HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
Lalb_Chr02g0158261 Lupinus albus HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 69.2
PSO017G1475 Papaver somniferum HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 69.2
PSO478G1705 Papaver somniferum HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 69.2
Psat3g206440 Pisum sativum HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 69.2
RcHm_v2.0_Chr6g0270681 Rosa chinensis HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
Sp3g01560 Schrenkiella parvula HOM05D000278 ORTHO05D004371 3.5e-10 68.2 52 71.2
BcaB01g05006 Brassica carinata HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
BcaB01g05007 Brassica carinata HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
BcaB08g36884 Brassica carinata HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
A03p07550 Brassica napus HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
A10p22990 Brassica napus HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
C03p08780 Brassica napus HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
BolC3t13374H Brassica oleracea HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
BraA03t10083Z Brassica rapa HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
BraA10t44368Z Brassica rapa HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
Ca_04079_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
Thhalv10013205m.g Eutrema salsugineum HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 71.2
FvH4_1g11210 Fragaria vesca HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 69.2
FAN19G3186 Fragaria x ananassa HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 69.2
FAN23G2332 Fragaria x ananassa HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 69.2
FAN28G0885 Fragaria x ananassa HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 69.2
Solyc02g085790.3 Solanum lycopersicum HOM05D000278 ORTHO05D004371 4.5e-10 67.8 52 69.2
AT3G02530 Arabidopsis thaliana HOM05D000278 ORTHO05D004371 5.9e-10 67.4 52 71.2
Medtr7g406870 Medicago truncatula HOM05D000278 ORTHO05D004371 5.9e-10 67.4 52 69.2
Phvul.008G004500 Phaseolus vulgaris HOM05D000278 ORTHO05D004371 5.9e-10 67.4 52 69.2
Potri.017G113601 Populus trichocarpa HOM05D000278 ORTHO05D004371 5.9e-10 67.4 52 71.2
Sabra17G0093800 Salix brachista HOM05D000278 ORTHO05D004371 5.9e-10 67.4 52 71.2
Sp6g28060 Schrenkiella parvula HOM05D000278 ORTHO05D004371 5.9e-10 67.4 52 69.2
Glyma.08G364000 Glycine max HOM05D000278 ORTHO05D004371 7.7e-10 67.0 46 76.1
SalBow7G4677 Salvia bowleyana HOM05D000278 ORTHO05D004371 7.7e-10 67.0 52 73.1
Sopen02g030480 Solanum pennellii HOM05D000278 ORTHO05D004371 7.7e-10 67.0 52 69.2
Atru.chr2.1903 Acer truncatum HOM05D000278 ORTHO05D004371 1.0e-09 66.6 52 69.2
Glyma.18G298100 Glycine max HOM05D000278 ORTHO05D004371 1.0e-09 66.6 46 73.9
CiPaw.04G040700 Carya illinoinensis HOM05D000278 ORTHO05D004371 1.3e-09 66.2 52 69.2
Lj1g0008026 Lotus japonicus HOM05D000278 ORTHO05D004371 1.3e-09 66.2 52 67.3
Lalb_Chr06g0174641 Lupinus albus HOM05D000278 ORTHO05D004371 1.3e-09 66.2 52 69.2
CANSAT64G2251 Cannabis sativa HOM05D000278 ORTHO05D004371 1.7e-09 65.9 52 69.2
BcaB02g09203 Brassica carinata HOM05D000278 ORTHO05D004371 2.2e-09 65.5 45 77.8
Eucgr.F02483 Eucalyptus grandis HOM05D000278 ORTHO05D004371 2.2e-09 65.5 52 71.2
Mapoly0013s0040 Marchantia polymorpha HOM05D000278 ORTHO05D004371 2.9e-09 65.1 52 69.2
Pp3c11_26000 Physcomitrium patens HOM05D000278 ORTHO05D004371 5.0e-09 64.3 52 65.4
RcHm_v2.0_Chr2g0138531 Rosa chinensis HOM05D000278 ORTHO05D004371 5.0e-09 64.3 52 67.3
SMO301G0002 Selaginella moellendorffii HOM05D000278 ORTHO05D004371 5.0e-09 64.3 52 65.4
RcHm_v2.0_Chr1g0314091 Rosa chinensis HOM05D000278 ORTHO05D019585 8.5e-09 63.5 58 58.6
CDE05G0458 Ceratophyllum demersum HOM05D000278 ORTHO05D004371 1.5e-08 62.8 52 71.2
TPR.G32446 Trifolium pratense HOM05D002007 ORTHO05D000355 1.5e-08 62.8 46 73.9
Rhsim10G0066200 Rhododendron simsii HOM05D000278 ORTHO05D004371 3.2e-08 61.6 54 66.7
RcHm_v2.0_Chr4g0409191 Rosa chinensis HOM05D000278 ORTHO05D004371 3.2e-08 61.6 52 65.4
AagrBONN_evm.TU.Sc2ySwM_344.2019 Anthoceros agrestis HOM05D000278 ORTHO05D004371 4.2e-08 61.2 52 61.5
CSS0036114 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 4.2e-08 61.2 46 73.9
Pp3c7_530 Physcomitrium patens HOM05D000278 ORTHO05D004371 4.2e-08 61.2 52 63.5
vmacro05568 Vaccinium macrocarpon HOM05D000278 ORTHO05D004371 4.2e-08 61.2 63 60.3
CBR_g8264 Chara braunii HOM05D000278 ORTHO05D004371 9.4e-08 60.1 52 61.5
TAR371G0474 Trochodendron aralioides HOM05D000278 ORTHO05D004371 2.1e-07 58.9 40 82.5
MCO16G095 Micromonas commoda HOM05D000278 ORTHO05D004371 4.7e-07 57.8 52 63.5


User provided reference genes

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