Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 7.0e-49 197.2 117 100.0
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 5.4e-41 171.0 107 82.2
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 7.3e-14 80.9 76 60.5
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 4.9e-10 68.2 85 44.7
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 1.4e-09 66.6 37 73.0
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 1.9e-09 66.2 39 76.9
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 2.4e-09 65.9 39 76.9
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 2.4e-09 65.9 39 76.9
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 3.2e-09 65.5 37 73.0
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 4.1e-09 65.1 37 73.0
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 7.1e-09 64.3 37 73.0
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 7.1e-09 64.3 37 73.0
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 9.2e-09 63.9 74 44.6
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 1.2e-08 63.5 79 50.6
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 1.2e-08 63.5 35 71.4
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 1.6e-08 63.2 37 67.6
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 2.1e-08 62.8 37 67.6
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 3.5e-08 62.0 37 70.3
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 3.5e-08 62.0 37 70.3
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 3.5e-08 62.0 37 70.3
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 3.5e-08 62.0 33 75.8
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 3.5e-08 62.0 73 45.2
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 3.5e-08 62.0 39 71.8
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 3.5e-08 62.0 31 80.6
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 4.6e-08 61.6 37 70.3
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 4.6e-08 61.6 33 75.8
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 4.6e-08 61.6 35 68.6
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 4.6e-08 61.6 31 83.9
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 4.6e-08 61.6 37 67.6
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 6.0e-08 61.2 31 80.6
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 6.0e-08 61.2 66 60.6
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 6.0e-08 61.2 31 80.6
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 6.0e-08 61.2 33 72.7
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 7.8e-08 60.8 32 78.1
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 7.8e-08 60.8 75 58.7
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 7.8e-08 60.8 32 78.1
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 7.8e-08 60.8 35 74.3
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 7.8e-08 60.8 37 73.0
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 1.0e-07 60.5 37 67.6
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 1.0e-07 60.5 32 75.0
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.0e-07 60.5 32 75.0
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.0e-07 60.5 31 77.4
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 1.0e-07 60.5 31 83.9
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 1.7e-07 59.7 31 80.6
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 2.3e-07 59.3 35 65.7
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 2.3e-07 59.3 73 43.8
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 2.3e-07 59.3 33 69.7
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 2.3e-07 59.3 41 65.9
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 2.3e-07 59.3 44 61.4
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 2.3e-07 59.3 101 38.6
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 3.0e-07 58.9 31 80.6
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 3.0e-07 58.9 31 77.4
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 3.0e-07 58.9 37 62.2
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 3.0e-07 58.9 36 66.7
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 3.0e-07 58.9 36 66.7
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 3.0e-07 58.9 36 66.7
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 3.9e-07 58.5 31 77.4
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 3.9e-07 58.5 31 80.6
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 3.9e-07 58.5 37 64.9
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 3.9e-07 58.5 31 80.6
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 3.9e-07 58.5 31 80.6
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 3.9e-07 58.5 31 77.4
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 5.1e-07 58.2 31 77.4
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 6.6e-07 57.8 31 77.4
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 6.6e-07 57.8 31 80.6
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 6.6e-07 57.8 31 80.6
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 6.6e-07 57.8 31 80.6
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 6.6e-07 57.8 31 80.6
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 6.6e-07 57.8 31 77.4
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 6.6e-07 57.8 75 42.7
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 8.6e-07 57.4 87 48.3
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 8.6e-07 57.4 32 71.9
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 8.6e-07 57.4 37 64.9
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 1.1e-06 57.0 31 74.2
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 1.1e-06 57.0 37 67.6
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 1.5e-06 56.6 30 80.0
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 1.5e-06 56.6 30 80.0
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 1.5e-06 56.6 30 80.0
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 1.5e-06 56.6 30 80.0
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 1.5e-06 56.6 37 62.2
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 1.5e-06 56.6 30 80.0
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 1.9e-06 56.2 100 48.0
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 2.5e-06 55.8 31 74.2
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 2.5e-06 55.8 37 64.9
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 2.5e-06 55.8 30 76.7
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 2.5e-06 55.8 30 80.0
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 4.3e-06 55.1 37 62.2
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 4.3e-06 55.1 35 65.7
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 5.6e-06 54.7 29 75.9
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 5.6e-06 54.7 30 70.0
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 7.3e-06 54.3 29 72.4


User provided reference genes

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