Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.6e-222 775.8 405 100.0
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.7e-182 642.9 404 83.7
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.2e-180 636.7 405 79.8
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 5.5e-178 627.9 405 80.0
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 4.7e-177 624.8 405 79.3
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.8e-176 622.9 405 77.8
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.4e-175 618.2 405 78.0
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.8e-173 612.8 405 79.8
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.0e-171 607.1 405 77.0
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.7e-171 606.3 409 77.3
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.9e-171 605.5 409 77.3
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 4.3e-170 601.7 405 74.3
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.3e-170 600.9 405 73.6
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.6e-169 599.7 405 73.3
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.6e-169 599.7 405 73.3
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 8.0e-169 597.4 406 75.4
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.3e-168 595.9 405 76.0
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.0e-168 595.5 405 77.5
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 4.4e-167 591.7 405 73.3
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 4.9e-166 588.2 420 71.7
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 6.4e-166 587.8 405 74.1
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.4e-165 586.6 405 73.1
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 2.7e-164 582.4 405 75.1
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 2.7e-164 582.4 405 73.1
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 7.8e-164 580.9 406 74.1
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.0e-163 580.5 405 75.6
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.3e-163 580.1 405 71.1
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.3e-163 580.1 405 74.1
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.7e-163 579.7 405 73.1
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.3e-163 579.3 410 72.7
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 3.9e-163 578.6 405 74.3
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.9e-163 578.6 405 74.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 5.0e-163 578.2 405 73.1
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 8.6e-163 577.4 404 72.3
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.9e-162 576.2 410 72.7
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.9e-162 576.2 405 74.8
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 2.5e-162 575.9 405 72.8
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 3.3e-162 575.5 410 72.4
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.3e-162 575.5 405 73.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.3e-162 575.1 409 72.9
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 5.6e-162 574.7 409 72.6
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 7.3e-162 574.3 405 75.1
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 9.5e-162 573.9 406 72.4
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 9.5e-162 573.9 406 72.4
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.2e-161 573.5 405 71.4
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.2e-161 573.5 406 71.9
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.2e-161 573.5 410 72.7
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.6e-161 573.2 405 71.4
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.8e-161 572.4 405 73.6
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.2e-161 571.2 410 72.4
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.8e-160 569.7 409 72.1
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.8e-160 569.7 409 72.1
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 8.9e-160 567.4 405 73.6
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.0e-159 566.2 405 71.1
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 2.6e-159 565.8 406 70.9
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 3.7e-158 562.0 404 71.3
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.1e-157 560.5 405 71.9
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.1e-157 560.5 405 71.1
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.4e-157 560.1 406 72.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-157 560.1 405 71.4
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.4e-157 560.1 406 70.2
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 3.2e-157 558.9 405 71.9
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 4.1e-157 558.5 406 71.2
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 4.1e-157 558.5 405 70.1
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 4.1e-157 558.5 406 72.2
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.2e-156 557.0 431 68.0
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 3.5e-156 555.4 405 72.1
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.6e-156 555.1 405 72.3
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.7e-155 553.1 405 71.1
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 3.0e-155 552.4 405 71.6
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 8.6e-155 550.8 406 73.4
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.1e-154 550.4 406 71.2
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.1e-154 550.4 406 71.9
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.5e-154 549.3 403 71.5
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 3.3e-154 548.9 406 70.9
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 4.3e-154 548.5 405 70.9
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 5.6e-154 548.1 406 69.5
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 4.7e-153 545.0 409 69.4
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 4.0e-152 542.0 395 69.6
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.2e-151 540.4 405 71.1
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.3e-150 537.0 410 68.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.7e-150 536.6 406 68.0
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 2.9e-150 535.8 412 70.1
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.4e-150 534.6 405 67.2
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 6.4e-150 534.6 405 67.2
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 6.4e-150 534.6 450 61.8
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.4e-149 533.5 442 64.0
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.2e-149 532.3 405 67.7
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 3.2e-149 532.3 453 64.9
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.1e-149 531.9 405 66.7
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 4.1e-149 531.9 405 67.9
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 5.4e-149 531.6 405 68.9
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 5.4e-149 531.6 443 67.0
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 7.1e-149 531.2 405 69.6
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 7.1e-149 531.2 405 69.4
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.1e-149 531.2 405 67.9
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.6e-148 530.0 405 69.4
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 6.0e-148 528.1 403 66.5
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 2.3e-147 526.2 405 68.9
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 3.0e-147 525.8 405 69.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 3.9e-147 525.4 405 66.4
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 3.9e-147 525.4 405 68.4
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 5.1e-147 525.0 405 68.9
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.5e-146 522.7 405 68.4
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.6e-145 520.0 403 64.3
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.4e-144 516.2 408 68.9
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 5.2e-144 515.0 405 67.4
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.5e-143 513.5 408 67.6
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-141 507.3 405 66.9
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-141 507.3 411 66.7
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.9e-141 506.5 405 66.4
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 9.2e-141 504.2 416 67.1
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.7e-139 500.0 405 64.9
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.9e-139 498.8 405 66.4
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 7.3e-138 494.6 405 64.0
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 3.6e-137 492.3 366 69.1
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 2.6e-135 486.1 403 61.3
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 4.4e-135 485.3 404 61.1
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.8e-120 436.8 337 69.1
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.4e-119 432.6 519 50.1
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 9.9e-119 431.0 381 60.6
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.8e-118 429.1 300 72.3
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.4e-117 426.4 442 58.8
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 9.3e-117 424.5 318 68.2
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.1e-112 411.0 438 55.9
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 5.3e-112 408.7 405 54.3
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.0e-107 394.4 407 53.3
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.0e-107 394.4 407 53.3
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 7.6e-103 378.3 409 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.0e-102 377.9 405 51.9
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.6e-92 342.8 406 54.4
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 5.0e-86 322.4 407 43.2
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.7e-81 307.4 196 78.6
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.3e-75 287.0 353 50.7
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 8.8e-75 285.0 410 45.1
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.8e-65 252.7 294 50.7
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 7.0e-64 248.8 399 40.9
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 3.5e-55 219.9 281 50.9
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-52 211.1 149 72.5
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.9e-41 173.7 145 64.8
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 4.3e-29 133.3 100 69.0
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.8e-27 125.9 85 82.4
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.0e-26 124.4 97 68.0
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.4e-26 123.2 95 62.1
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 5.4e-24 116.3 415 29.4
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.2e-20 105.1 123 48.8
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.7e-20 103.2 68 76.5
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.4e-18 97.1 79 65.8
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 9.9e-18 95.5 74 64.9
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 7.1e-16 89.4 84 57.1
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.0e-14 85.5 409 23.7
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 8.7e-14 82.4 387 24.3
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.3e-13 80.1 63 60.3
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.8e-11 74.7 62 62.9
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 2.6e-10 70.9 433 21.7
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 7.6e-10 69.3 62 64.5


User provided reference genes

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