Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2619 Trochodendron aralioides HOM05D001519 ORTHO05D001403 3.2e-36 154.5 73 100.0
TAR369G1052 Trochodendron aralioides HOM05D001519 ORTHO05D001403 2.0e-33 145.2 73 94.5
TAR626G0346 Trochodendron aralioides HOM05D001519 ORTHO05D001403 5.7e-33 143.7 73 93.2
TAR381G0301 Trochodendron aralioides HOM05D001519 ORTHO05D001403 3.7e-16 87.8 46 89.1
CSS0008036 Camellia sinensis var. sinensis HOM05D001519 ORTHO05D001403 2.9e-13 78.2 46 78.3
CSS0034902 Camellia sinensis var. sinensis HOM05D001519 ORTHO05D001403 2.9e-13 78.2 46 78.3
Dinv04556 Davidia involucrata HOM05D001519 ORTHO05D001403 3.9e-13 77.8 46 80.4
arahy.Tifrunner.gnm1.ann1.DP20MQ Arachis hypogaea HOM05D001519 ORTHO05D001403 5.0e-13 77.4 46 73.9
MBI02_g26228_MAGBIO Magnolia biondii HOM05D001519 ORTHO05D001403 5.0e-13 77.4 46 76.1
PGR142G3347 Punica granatum HOM05D001519 ORTHO05D001403 5.0e-13 77.4 46 78.3
Thecc.06G160000 Theobroma cacao HOM05D001519 ORTHO05D001403 5.0e-13 77.4 46 78.3
Rhsim12G0005800 Rhododendron simsii HOM05D001519 ORTHO05D001403 8.6e-13 76.6 46 76.1
arahy.Tifrunner.gnm1.ann1.FLQ7SK Arachis hypogaea HOM05D001519 ORTHO05D001403 1.1e-12 76.3 46 73.9
CiPaw.09G132300 Carya illinoinensis HOM05D001519 ORTHO05D001403 1.1e-12 76.3 46 78.3
COL.COLO4_22822 Corchorus olitorius HOM05D001519 ORTHO05D001403 1.1e-12 76.3 46 76.1
Glyma.15G089500 Glycine max HOM05D001519 ORTHO05D001403 1.5e-12 75.9 46 76.1
TPR.G12232 Trifolium pratense HOM05D001519 ORTHO05D001403 1.5e-12 75.9 46 73.9
arahy.Tifrunner.gnm1.ann1.7XG90Z Arachis hypogaea HOM05D001519 ORTHO05D001403 1.9e-12 75.5 46 73.9
arahy.Tifrunner.gnm1.ann1.CJE6I1 Arachis hypogaea HOM05D001519 ORTHO05D001403 1.9e-12 75.5 46 69.6
QL05p052713 Quercus lobata HOM05D001519 ORTHO05D001403 1.9e-12 75.5 46 76.1
Solyc02g071570.4 Solanum lycopersicum HOM05D001519 ORTHO05D001403 1.9e-12 75.5 46 76.1
Sopen02g020590 Solanum pennellii HOM05D001519 ORTHO05D001403 1.9e-12 75.5 46 76.1
PGSC0003DMG400007246 Solanum tuberosum HOM05D001519 ORTHO05D001403 1.9e-12 75.5 46 76.1
vmacro00975 Vaccinium macrocarpon HOM05D001519 ORTHO05D001403 1.9e-12 75.5 46 78.3
Lj1g0019575 Lotus japonicus HOM05D001519 ORTHO05D001403 2.5e-12 75.1 46 73.9
VMungo0540G1455 Vigna mungo HOM05D001519 ORTHO05D001403 2.5e-12 75.1 46 76.1
CAN.G257.112 Capsicum annuum HOM05D001519 ORTHO05D001403 3.3e-12 74.7 46 76.1
Cpa.g.sc1431.1 Carica papaya HOM05D001519 ORTHO05D001403 3.3e-12 74.7 46 73.9
Cc09_g10070 Coffea canephora HOM05D001519 ORTHO05D001403 3.3e-12 74.7 46 73.9
Gohir.D05G154600 Gossypium hirsutum HOM05D001519 ORTHO05D001403 3.3e-12 74.7 63 57.1
Nn5g28078 Nelumbo nucifera HOM05D001519 ORTHO05D001403 3.3e-12 74.7 46 78.3
Nitab4.5_0005943g0040 Nicotiana tabacum HOM05D001519 ORTHO05D001403 3.3e-12 74.7 46 73.9
GSVIVG01021319001 Vitis vinifera HOM05D001519 ORTHO05D001403 3.3e-12 74.7 46 78.3
Manes.14G149000 Manihot esculenta HOM05D001519 ORTHO05D001403 4.3e-12 74.3 45 73.3
RcHm_v2.0_Chr5g0012591 Rosa chinensis HOM05D001519 ORTHO05D001403 4.3e-12 74.3 46 76.1
Oeu040944.1 Olea europaea HOM05D001519 ORTHO05D001403 5.6e-12 73.9 46 76.1
Sed0020126 Sechium edule HOM05D001519 ORTHO05D001403 5.6e-12 73.9 46 76.1
TWI09G1171 Tripterygium wilfordii HOM05D001519 ORTHO05D001403 5.6e-12 73.9 46 76.1
Actinidia19472 Actinidia chinensis HOM05D001519 ORTHO05D001403 7.3e-12 73.6 46 76.1
CDE05G1809 Ceratophyllum demersum HOM05D001519 ORTHO05D001403 7.3e-12 73.6 46 71.7
Haze_05459 Corylus avellana HOM05D001519 ORTHO05D001403 7.3e-12 73.6 46 76.1
arahy.Tifrunner.gnm1.ann1.CRBZ62 Arachis hypogaea HOM05D001519 ORTHO05D001403 9.5e-12 73.2 46 69.6
CANSAT35G1674 Cannabis sativa HOM05D001519 ORTHO05D001403 9.5e-12 73.2 46 76.1
ClCG07G003760 Citrullus lanatus HOM05D001519 ORTHO05D001403 9.5e-12 73.2 46 73.9
Ciclev10016169m.g Citrus clementina HOM05D001519 ORTHO05D001403 1.2e-11 72.8 45 75.6
Eucgr.D00407 Eucalyptus grandis HOM05D001519 ORTHO05D001403 1.2e-11 72.8 46 76.1
Gorai.009G158900 Gossypium raimondii HOM05D001519 ORTHO05D001403 1.2e-11 72.8 46 71.7
ATR0618G303 Amborella trichopoda HOM05D001519 ORTHO05D001403 1.6e-11 72.4 46 67.4
Medtr3g024400 Medicago truncatula HOM05D001519 ORTHO05D001403 1.6e-11 72.4 46 69.6
Phvul.006G168700 Phaseolus vulgaris HOM05D001519 ORTHO05D001403 1.6e-11 72.4 46 73.9
Psat5g202080 Pisum sativum HOM05D001519 ORTHO05D001403 1.6e-11 72.4 46 71.7
CAN.G257.109 Capsicum annuum HOM05D001519 ORTHO05D001403 2.1e-11 72.0 46 73.9
MELO3C026567.2 Cucumis melo HOM05D001519 ORTHO05D001403 2.1e-11 72.0 46 71.7
CsaV3_5G008570 Cucumis sativus L. HOM05D001519 ORTHO05D001403 2.1e-11 72.0 46 71.7
Aqoxy4G01914 Aquilegia oxysepala HOM05D001519 ORTHO05D001403 2.8e-11 71.6 46 69.6
FvH4_3g35760 Fragaria vesca HOM05D001519 ORTHO05D001403 2.8e-11 71.6 46 73.9
FAN11G0956 Fragaria x ananassa HOM05D001519 ORTHO05D001403 2.8e-11 71.6 46 73.9
FAN25G2732 Fragaria x ananassa HOM05D001519 ORTHO05D001403 2.8e-11 71.6 46 73.9
Lalb_Chr20g0117641 Lupinus albus HOM05D001519 ORTHO05D001403 2.8e-11 71.6 46 71.7
DCAR_007920 Daucus carota HOM05D001519 ORTHO05D001403 3.6e-11 71.2 46 71.7
PSO541G3409 Papaver somniferum HOM05D001519 ORTHO05D001403 3.6e-11 71.2 46 69.6
PSO675G0313 Papaver somniferum HOM05D001519 ORTHO05D001403 3.6e-11 71.2 46 69.6
Peaxi162Scf00032g00031 Petunia axillaris HOM05D001519 ORTHO05D001403 3.6e-11 71.2 46 73.9
Prupe.4G071600 Prunus persica HOM05D001519 ORTHO05D001403 3.6e-11 71.2 46 73.9
Nitab4.5_0003913g0070 Nicotiana tabacum HOM05D001519 ORTHO05D001403 4.7e-11 70.9 46 71.7
Hund21363 Selenicereus undatus HOM05D001519 ORTHO05D001403 4.7e-11 70.9 45 71.1
Hund31135 Selenicereus undatus HOM05D001519 ORTHO05D001403 4.7e-11 70.9 45 71.1
Atru.chr10.1473 Acer truncatum HOM05D001519 ORTHO05D001403 8.0e-11 70.1 45 73.3
AUR62035832 Chenopodium quinoa HOM05D001519 ORTHO05D001403 8.0e-11 70.1 46 67.4
Ca_04630_v3 Cicer arietinum L. HOM05D001519 ORTHO05D001403 8.0e-11 70.1 46 67.4
FAN21G4009 Fragaria x ananassa HOM05D001519 ORTHO05D001403 8.0e-11 70.1 46 71.7
SalBow8G0244 Salvia bowleyana HOM05D001519 ORTHO05D001403 8.0e-11 70.1 46 69.6
SalBow8G1654 Salvia bowleyana HOM05D001519 ORTHO05D001403 8.0e-11 70.1 46 69.6
EL10Ac8g19821 Beta vulgaris HOM05D001519 ORTHO05D001403 1.4e-10 69.3 45 66.7
MD00G1093300 Malus domestica HOM05D001519 ORTHO05D001403 1.4e-10 69.3 46 71.7
Os07g0545900 Oryza sativa ssp. japonica HOM05D001519 ORTHO05D001403 1.4e-10 69.3 46 65.2
Potri.011G076800 Populus trichocarpa HOM05D001519 ORTHO05D001403 1.4e-10 69.3 45 71.1
Sc17g0005490 Simmondsia chinensis HOM05D001519 ORTHO05D001403 1.4e-10 69.3 45 68.9
Duzib235G1155 Durio zibethinus HOM05D001519 ORTHO05D001403 1.8e-10 68.9 46 69.6
Lj2A312T42 Lonicera japonica HOM05D001519 ORTHO05D001403 1.8e-10 68.9 46 69.6
Sabra11G0063900 Salix brachista HOM05D001519 ORTHO05D001403 1.8e-10 68.9 45 68.9
MSTRG.12878 Avicennia marina HOM05D001519 ORTHO05D001403 2.3e-10 68.6 46 65.2
AUR62027623 Chenopodium quinoa HOM05D001519 ORTHO05D001403 2.3e-10 68.6 46 67.4
SGA_v2.0_scaffold1G00117 Striga asiatica HOM05D001519 ORTHO05D001403 3.1e-10 68.2 46 67.4
MD10G1270000 Malus domestica HOM05D001519 ORTHO05D001403 4.0e-10 67.8 46 69.6
Ah.14g086830 Amaranthus hybridus HOM05D000065 ORTHO05D000162 6.8e-10 67.0 43 72.1
FAN25G2627 Fragaria x ananassa HOM05D001519 ORTHO05D001403 6.8e-10 67.0 46 69.6
Gorai.002G168500 Gossypium raimondii HOM05D001519 ORTHO05D001403 8.9e-10 66.6 46 67.4
Gohir.A06G143900 Gossypium hirsutum HOM05D001519 ORTHO05D001403 1.2e-09 66.2 46 67.4
Zm00001eb323740 Zea mays HOM05D001519 ORTHO05D001403 1.2e-09 66.2 46 63.0
ECA246G5076 Erigeron canadensis HOM05D001519 ORTHO05D001403 1.5e-09 65.9 46 63.0
ECA246G0008 Erigeron canadensis HOM05D001519 ORTHO05D001403 2.0e-09 65.5 46 63.0
Carub.0007s2220 Capsella rubella HOM05D001519 ORTHO05D001403 2.6e-09 65.1 46 63.0
Migut.F01503 Erythranthe guttata HOM05D001519 ORTHO05D001403 2.6e-09 65.1 46 60.9
AL7G35190 Arabidopsis lyrata HOM05D001519 ORTHO05D001403 4.4e-09 64.3 46 63.0
AT4G18975 Arabidopsis thaliana HOM05D001519 ORTHO05D001403 4.4e-09 64.3 46 63.0
HanXRQChr07g0203241 Helianthus annuus HOM05D001519 ORTHO05D001403 4.4e-09 64.3 46 63.0
HanXRQChr07g0203331 Helianthus annuus HOM05D001519 ORTHO05D001403 4.4e-09 64.3 46 63.0
Lsat_1_v5_gn_5_21060 Lactuca sativa HOM05D001519 ORTHO05D001403 4.4e-09 64.3 46 63.0
Aa31LG6G1650 Aethionema arabicum HOM05D001519 ORTHO05D001403 5.8e-09 63.9 46 60.9
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 5.8e-09 63.9 46 58.7
Lsat_1_v5_gn_8_17981 Lactuca sativa HOM05D001519 ORTHO05D001403 7.5e-09 63.5 46 63.0
Sp7g17690 Schrenkiella parvula HOM05D001519 ORTHO05D001403 7.5e-09 63.5 46 60.9
FAN16G2590 Fragaria x ananassa HOM05D001519 ORTHO05D001403 9.8e-09 63.2 46 67.4
FvH4_3g33210 Fragaria vesca HOM05D001519 ORTHO05D001403 1.3e-08 62.8 46 65.2
FAN11G0389 Fragaria x ananassa HOM05D001519 ORTHO05D001403 1.3e-08 62.8 46 65.2
Thhalv10026338m.g Eutrema salsugineum HOM05D001519 ORTHO05D001403 1.7e-08 62.4 46 58.7
A01p10990 Brassica napus HOM05D001519 ORTHO05D001403 2.2e-08 62.0 46 60.9
BraA01t01046Z Brassica rapa HOM05D001519 ORTHO05D001403 2.2e-08 62.0 46 60.9
BcaNung04026 Brassica carinata HOM05D001519 ORTHO05D001403 4.9e-08 60.8 44 61.4
Gohir.D01G137100 Gossypium hirsutum HOM05D001519 ORTHO05D001403 4.9e-08 60.8 46 63.0
Gohir.D01G137600 Gossypium hirsutum HOM05D001519 ORTHO05D001403 4.9e-08 60.8 46 63.0
C01p13010 Brassica napus HOM05D001519 ORTHO05D001403 6.4e-08 60.5 46 58.7
BolC1t01276H Brassica oleracea HOM05D001519 ORTHO05D001403 6.4e-08 60.5 46 58.7
CARHR225880 Cardamine hirsuta HOM05D001519 ORTHO05D001403 6.4e-08 60.5 46 58.7
arahy.Tifrunner.gnm1.ann1.X2MCXS Arachis hypogaea HOM05D001519 ORTHO05D001403 3.2e-07 58.2 37 64.9
Gohir.D04G031550 Gossypium hirsutum HOM05D001519 ORTHO05D001403 5.4e-07 57.4 43 62.8
Gorai.012G035700 Gossypium raimondii HOM05D001519 ORTHO05D001403 5.4e-07 57.4 43 62.8
arahy.Tifrunner.gnm1.ann1.RJRI99 Arachis hypogaea HOM05D001519 ORTHO05D001403 1.6e-06 55.8 37 62.2
arahy.Tifrunner.gnm1.ann1.W1PD5V Arachis hypogaea HOM05D001519 ORTHO05D001403 2.7e-06 55.1 37 62.2
Gohir.A05G152100 Gossypium hirsutum HOM05D001519 ORTHO05D001403 4.6e-06 54.3 34 73.5


User provided reference genes

Program Settings