Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 0.0e+00 1094.0 549 100.0
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 0.0e+00 1090.1 549 99.6
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-287 991.9 549 90.3
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-287 991.9 549 90.3
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.3e-243 846.3 558 74.9
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.4e-240 836.3 556 75.0
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.4e-239 831.6 549 74.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.6e-236 821.2 549 77.6
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 6.0e-236 820.8 573 71.0
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.2e-233 812.4 552 73.7
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.1e-232 810.1 551 74.2
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.0e-231 805.8 552 72.5
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.3e-230 803.1 549 73.8
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.5e-230 800.8 547 72.6
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 6.5e-230 800.8 547 73.1
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 8.5e-230 800.4 551 72.4
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 1.9e-229 799.3 551 72.6
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.4e-226 787.3 544 71.7
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.2e-225 785.8 553 72.3
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.5e-223 779.6 544 70.6
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.3e-222 776.5 554 70.8
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.7e-222 776.2 561 70.4
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 5.5e-221 771.2 559 69.2
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 7.2e-221 770.8 548 70.3
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 9.4e-221 770.4 546 70.5
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 6.7e-219 764.2 556 71.2
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 5.7e-218 761.1 550 68.2
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 9.7e-218 760.4 553 70.2
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.2e-217 759.2 551 71.1
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.8e-216 756.1 549 68.1
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 3.1e-216 755.4 546 69.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.1e-216 755.4 560 69.3
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.2e-215 753.4 552 69.7
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 5.9e-215 751.1 550 67.6
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.7e-214 749.6 563 67.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.2e-214 749.2 542 70.1
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 2.2e-214 749.2 554 68.4
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.2e-213 745.3 545 70.6
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.2e-213 745.3 564 67.7
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 3.2e-213 745.3 555 68.3
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.1e-212 742.7 551 68.6
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.1e-212 742.7 559 67.4
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.7e-212 742.3 552 69.6
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 3.6e-212 741.9 554 68.4
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.3e-211 739.2 548 68.8
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.0e-211 738.8 553 67.5
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 3.0e-211 738.8 553 67.3
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.6e-210 735.7 572 66.6
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 2.2e-209 732.6 546 67.4
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 8.2e-209 730.7 564 65.4
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.8e-208 729.6 554 66.6
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 3.1e-208 728.8 551 67.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.2e-207 726.9 552 66.7
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 2.9e-206 722.2 542 66.2
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 3.8e-206 721.8 552 65.0
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 8.5e-206 720.7 546 67.0
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.2e-205 718.4 485 72.2
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 2.7e-204 715.7 547 66.9
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.6e-204 715.3 560 66.1
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 4.7e-204 714.9 544 66.5
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.8e-203 713.0 568 65.1
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 6.7e-203 711.1 559 65.5
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-202 709.9 557 66.2
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.5e-202 709.9 562 65.7
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-201 706.8 552 66.3
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.7e-201 706.4 552 68.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.4e-200 703.4 546 64.8
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.4e-200 703.4 445 77.3
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 2.4e-200 702.6 548 64.4
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.0e-200 701.0 520 68.5
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-198 696.4 574 63.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.9e-198 695.7 572 62.9
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 3.8e-198 695.3 563 63.8
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 5.0e-198 694.9 543 65.2
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.5e-198 694.5 576 61.6
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 8.5e-198 694.1 569 62.6
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.9e-197 693.0 575 63.3
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.9e-197 693.0 575 63.3
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 2.5e-197 692.6 575 63.3
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.2e-196 690.3 571 63.2
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.2e-196 690.3 577 63.1
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.0e-195 687.2 400 81.5
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.3e-195 686.0 561 62.7
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.6e-194 682.6 572 61.7
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.4e-194 682.2 572 62.4
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.7e-194 681.4 462 73.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 9.8e-194 680.6 568 62.0
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-192 676.8 552 63.4
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 3.1e-192 675.6 555 63.4
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 9.1e-192 674.1 568 61.8
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 9.1e-192 674.1 571 61.1
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.0e-191 672.9 571 62.3
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.5e-191 671.8 552 63.2
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 7.7e-191 671.0 556 60.8
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.7e-190 669.8 556 62.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.7e-190 669.8 563 61.3
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 6.6e-190 667.9 552 62.7
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.5e-189 666.8 555 62.2
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 6.1e-188 661.4 556 62.1
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.0e-187 659.1 548 62.4
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 5.2e-187 658.3 570 61.1
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.4e-184 650.2 566 58.7
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-184 649.4 566 60.1
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 3.8e-182 642.1 550 62.7
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 5.0e-182 641.7 545 60.7
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 4.7e-180 635.2 429 73.2
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.6e-178 629.4 567 59.1
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-177 627.1 560 60.2
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 2.2e-177 626.3 551 60.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 8.3e-177 624.4 555 59.8
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 7.0e-176 621.3 448 66.5
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.6e-175 620.2 555 60.9
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 2.3e-174 616.3 579 55.8
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 4.3e-173 612.1 548 59.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 8.0e-172 607.8 533 60.8
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-162 575.9 402 69.2
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 9.9e-162 574.3 551 55.7
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 7.1e-160 568.2 384 71.4
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.2e-159 567.4 501 59.3
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 5.6e-157 558.5 544 57.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.1e-156 556.6 534 56.4
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-153 547.4 337 76.6
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 4.8e-148 528.9 555 54.1
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.6e-140 503.8 301 79.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.3e-134 484.2 389 65.0
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.3e-126 457.6 475 54.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 6.2e-124 448.7 476 45.4
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.1e-111 407.1 513 48.3
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.6e-111 406.0 280 70.0
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 9.4e-104 381.7 325 63.1
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.7e-97 360.9 411 42.6
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 4.5e-90 336.3 197 78.2
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.7e-87 326.2 369 47.7
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 8.0e-87 325.5 210 71.4
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.8e-86 324.3 357 50.7
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.1e-75 285.4 155 86.5
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 5.0e-57 226.5 225 56.0
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.1e-56 225.3 199 58.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.7e-52 211.5 283 47.3
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.2e-46 189.9 169 58.0
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 6.8e-46 189.5 287 43.6
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.7e-33 148.3 91 76.9
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-32 145.2 91 75.8
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 3.6e-31 140.6 470 25.1
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.6e-23 115.2 79 69.6
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.8e-22 111.7 76 72.4
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.8e-22 111.7 69 76.8
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 6.9e-22 109.8 69 75.4
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 7.6e-21 106.3 115 46.1
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.3e-20 105.5 151 43.0
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.9e-20 104.4 180 31.7
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.5e-16 92.0 164 39.0
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 5.3e-14 83.6 51 76.5
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.3e-12 79.0 73 50.7
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.9e-12 77.0 75 54.7
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.3e-08 63.9 53 58.5


User provided reference genes

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