Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 7.0e-153 543.9 270 100.0
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 9.5e-134 480.3 311 81.0
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 8.4e-122 440.7 309 72.5
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 2.4e-121 439.1 307 73.3
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.1e-120 436.0 310 73.9
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 4.6e-120 434.9 310 72.3
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 6.0e-120 434.5 309 72.8
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.3e-119 433.3 310 72.9
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 1.3e-119 433.3 305 72.5
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 5.1e-119 431.4 310 71.9
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 5.1e-119 431.4 310 73.2
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 6.6e-119 431.0 310 72.6
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 6.6e-119 431.0 309 72.2
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 8.7e-119 430.6 310 72.6
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 1.5e-118 429.9 305 73.1
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 1.9e-118 429.5 308 72.4
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 1.9e-118 429.5 309 71.5
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 1.9e-118 429.5 310 71.0
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 4.3e-118 428.3 310 71.3
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 5.6e-118 427.9 311 71.1
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 9.6e-118 427.2 310 71.3
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.6e-117 426.4 310 71.3
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 2.8e-117 425.6 308 70.8
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.1e-116 423.7 311 70.7
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 1.1e-116 423.7 311 70.7
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.1e-116 423.7 310 70.3
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.1e-116 423.7 315 69.8
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 1.4e-116 423.3 307 71.0
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 1.4e-116 423.3 310 70.0
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.4e-116 423.3 306 69.0
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.8e-116 422.9 311 70.7
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.8e-116 422.9 311 69.8
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 2.4e-116 422.5 311 69.8
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 2.4e-116 422.5 311 69.5
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 4.0e-116 421.8 310 70.0
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 4.0e-116 421.8 311 69.8
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 5.3e-116 421.4 311 70.4
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 6.9e-116 421.0 305 68.9
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 6.9e-116 421.0 310 70.0
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 9.0e-116 420.6 310 70.3
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 9.0e-116 420.6 310 70.0
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 1.2e-115 420.2 337 66.2
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 1.2e-115 420.2 308 70.1
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 1.5e-115 419.9 311 70.1
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.5e-115 419.9 310 69.0
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.0e-115 419.5 311 70.1
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 2.0e-115 419.5 311 69.5
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 2.0e-115 419.5 311 69.8
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 2.6e-115 419.1 310 70.3
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 2.6e-115 419.1 311 69.5
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 2.6e-115 419.1 311 69.5
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 3.4e-115 418.7 310 71.3
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 4.4e-115 418.3 307 69.7
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 4.4e-115 418.3 307 70.4
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 5.8e-115 417.9 309 70.6
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 5.8e-115 417.9 311 69.1
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 5.8e-115 417.9 307 69.7
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 7.6e-115 417.5 309 70.9
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 9.9e-115 417.2 311 69.1
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.3e-114 416.8 306 69.9
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 1.3e-114 416.8 306 69.9
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.7e-114 416.4 309 69.6
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 2.2e-114 416.0 306 69.9
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 6.4e-114 414.5 310 70.0
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 1.1e-113 413.7 311 68.8
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.1e-113 413.7 308 68.5
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.1e-113 413.7 308 68.5
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 1.9e-113 412.9 306 68.6
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 2.4e-113 412.5 310 70.0
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 2.4e-113 412.5 306 69.3
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 2.4e-113 412.5 307 68.4
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 3.2e-113 412.1 309 69.3
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 5.4e-113 411.4 311 68.5
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 7.1e-113 411.0 306 69.6
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 7.1e-113 411.0 334 64.7
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 1.2e-112 410.2 310 68.4
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.6e-112 409.8 310 67.4
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 2.1e-112 409.5 310 69.7
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 2.7e-112 409.1 308 69.5
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 4.6e-112 408.3 308 67.2
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 4.6e-112 408.3 310 68.7
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 7.8e-112 407.5 315 67.9
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.5e-110 403.3 306 67.6
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 5.6e-110 401.4 308 66.9
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.3e-109 400.2 308 67.2
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 2.8e-109 399.1 306 67.6
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 2.8e-109 399.1 306 67.6
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 2.8e-109 399.1 306 67.6
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 3.6e-109 398.7 284 71.5
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 3.6e-109 398.7 306 66.7
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 4.8e-109 398.3 306 67.0
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 6.2e-109 397.9 306 67.3
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 8.1e-109 397.5 306 68.3
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.1e-108 397.1 304 67.8
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 1.1e-108 397.1 304 67.1
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 1.1e-108 397.1 304 67.1
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 1.1e-108 397.1 304 67.8
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 1.4e-108 396.7 351 60.7
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 2.4e-108 396.0 306 67.0
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 3.1e-108 395.6 304 67.8
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 3.1e-108 395.6 305 66.6
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 4.0e-108 395.2 306 67.0
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 5.3e-108 394.8 307 65.8
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 6.9e-108 394.4 304 66.8
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 9.0e-108 394.0 306 66.7
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 1.2e-107 393.7 304 66.4
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 2.6e-107 392.5 306 66.7
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 1.7e-106 389.8 308 65.9
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 2.9e-106 389.0 352 60.5
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 9.3e-105 384.0 289 68.9
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 6.9e-100 367.9 290 67.2
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 3.4e-99 365.5 266 71.1
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 7.6e-99 364.4 306 63.1
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 1.7e-98 363.2 266 71.4
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 9.3e-97 357.5 267 69.7
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 5.1e-95 351.7 311 58.2
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 4.8e-93 345.1 271 67.2
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 4.1e-92 342.0 307 58.0
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.7e-90 336.7 309 55.7
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 3.2e-89 332.4 241 71.8
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 3.3e-86 322.4 309 54.7
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 1.3e-85 320.5 255 66.7
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 9.4e-81 304.3 313 58.5
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 1.0e-74 284.3 306 48.7
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 9.4e-73 277.7 255 57.6
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 9.4e-73 277.7 220 65.5
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 3.9e-71 272.3 233 62.7
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 1.5e-70 270.4 311 48.6
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.6e-67 259.6 170 77.6
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.1e-64 250.0 170 75.3
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 2.7e-64 249.6 171 73.1
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 1.6e-59 233.8 181 68.5
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.9e-57 226.9 265 49.1
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.5e-57 226.5 168 72.6
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 2.4e-52 209.9 235 54.9
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 2.5e-41 173.3 156 60.3
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 5.2e-39 165.6 117 69.2
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 8.0e-32 141.7 82 79.3
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 8.9e-31 138.3 78 80.8
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 8.9e-31 138.3 78 80.8
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-29 132.1 84 67.9
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 6.4e-29 132.1 100 68.0
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 8.6e-26 121.7 83 71.1
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.7e-24 115.9 77 68.8
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 6.8e-23 112.1 175 41.7
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 2.0e-22 110.5 74 71.6
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.3e-21 107.8 64 75.0
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.3e-18 97.1 107 52.3
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 3.0e-18 96.7 327 26.6
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.2e-14 84.7 46 82.6
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 1.6e-11 74.3 77 54.5
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.9e-09 67.4 39 74.4
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 8.1e-08 62.0 31 83.9


User provided reference genes

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