Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 8.1e-100 367.1 186 100.0
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.1e-56 223.8 199 64.3
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 4.1e-43 178.7 196 53.6
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 2.3e-38 162.9 195 49.2
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 5.3e-35 151.8 193 49.7
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.7e-34 149.4 197 46.2
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 3.2e-32 142.5 205 48.3
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.1e-31 139.8 181 50.8
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 4.4e-29 132.1 200 47.0
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 4.4e-29 132.1 158 50.0
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 8.3e-28 127.9 169 47.3
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 8.3e-28 127.9 169 47.3
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 8.3e-28 127.9 170 45.3
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.8e-27 126.7 171 46.2
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 3.1e-27 125.9 167 48.5
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 5.0e-25 118.6 169 47.3
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 8.6e-25 117.9 186 44.1
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.5e-24 117.1 190 43.2
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.3e-24 115.9 189 38.6
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 4.2e-24 115.5 174 48.3
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 7.2e-24 114.8 197 43.1
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 2.8e-23 112.8 182 43.4
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 2.8e-23 112.8 179 48.6
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 4.7e-23 112.1 172 44.2
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.4e-22 110.5 201 44.3
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 2.3e-22 109.8 165 43.0
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 3.0e-22 109.4 180 43.9
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 3.0e-22 109.4 213 39.9
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 3.0e-22 109.4 240 37.1
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 6.8e-22 108.2 175 44.0
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.2e-21 107.5 164 42.1
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 1.5e-21 107.1 97 58.8
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 2.6e-21 106.3 172 43.6
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 5.7e-21 105.1 185 36.2
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 3.7e-20 102.4 184 39.7
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 4.9e-20 102.1 155 41.3
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 6.3e-20 101.7 154 42.2
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 1.1e-19 100.9 209 38.3
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.4e-19 100.5 205 36.6
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 2.4e-19 99.8 205 36.1
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 4.1e-19 99.0 171 39.2
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 5.4e-19 98.6 179 41.9
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.0e-18 96.7 97 52.6
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 2.0e-18 96.7 120 53.3
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 2.0e-18 96.7 175 41.1
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 3.5e-18 95.9 150 44.0
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 7.8e-18 94.7 166 41.6
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 1.0e-17 94.4 146 41.8
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 2.3e-17 93.2 168 39.3
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.3e-17 93.2 146 42.5
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 6.6e-17 91.7 108 48.1
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.5e-16 90.5 184 38.6
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 1.9e-16 90.1 156 41.0
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 7.3e-16 88.2 158 39.2
Dinv28182 Davidia involucrata HOM05D008015 ORTHO05D009180 2.1e-15 86.7 174 36.8
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 2.1e-15 86.7 87 51.7
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 4.7e-15 85.5 98 50.0
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 6.1e-15 85.1 193 36.3
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 8.0e-15 84.7 92 47.8
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 1.4e-14 84.0 168 32.7
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.4e-14 84.0 114 43.0
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.8e-14 83.6 162 38.3
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 1.8e-14 83.6 92 47.8
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 3.1e-14 82.8 198 36.9
FAN19G3187 Fragaria x ananassa HOM05D008015 ORTHO05D009180 4.0e-14 82.4 196 34.7
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 1.5e-13 80.5 117 47.9
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 4.4e-13 79.0 160 38.8
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 5.8e-13 78.6 169 37.9
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 7.5e-13 78.2 175 41.1
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 9.8e-13 77.8 93 51.6
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 4.9e-12 75.5 172 34.9
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 4.9e-12 75.5 93 50.5
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 6.4e-12 75.1 93 50.5
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.1e-11 74.3 93 49.5
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.1e-11 74.3 93 50.5
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 1.1e-11 74.3 96 47.9
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 1.4e-11 73.9 93 49.5
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 1.4e-11 73.9 93 49.5
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 1.4e-11 73.9 93 49.5
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.4e-11 73.9 135 40.0
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 5.4e-11 72.0 94 51.1
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 9.2e-11 71.2 93 49.5
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.0e-10 70.1 112 42.0
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 7.8e-10 68.2 92 48.9
Migut.K00921 Erythranthe guttata HOM05D008015 ORTHO05D009180 1.7e-09 67.0 186 33.9
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 1.7e-09 67.0 58 53.4
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 2.3e-09 66.6 100 45.0
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 2.3e-09 66.6 101 42.6
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 3.0e-09 66.2 93 47.3
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 3.0e-09 66.2 117 41.9
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 8.6e-09 64.7 100 44.0
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 8.6e-09 64.7 108 43.5
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.5e-08 63.9 97 41.2
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 1.5e-08 63.9 100 43.0
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 2.5e-08 63.2 64 54.7
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 3.3e-08 62.8 99 43.4
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 3.3e-08 62.8 99 43.4
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 3.3e-08 62.8 99 43.4
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 4.3e-08 62.4 101 41.6
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 7.3e-08 61.6 167 38.3
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 7.3e-08 61.6 99 43.4
Lj2P519T18 Lonicera japonica HOM05D008015 ORTHO05D009180 9.5e-08 61.2 140 37.9
unitig_32.g11793 Utricularia gibba HOM05D008015 ORTHO05D009180 6.2e-07 58.5 91 41.8
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 8.0e-07 58.2 45 66.7
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 1.4e-06 57.4 91 45.1
MBI13_g29561_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 6.8e-06 55.1 120 35.8
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 6.8e-06 55.1 92 38.0


User provided reference genes

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