Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.0e-124 450.3 258 100.0
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 8.1e-90 334.3 256 71.5
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 7.6e-88 327.8 258 71.3
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 8.6e-84 314.3 262 68.7
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.5e-83 313.5 258 74.0
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 2.1e-82 309.7 261 67.8
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.8e-81 306.6 252 73.0
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 2.4e-81 306.2 255 68.6
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 4.0e-81 305.4 258 66.7
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 8.9e-81 304.3 260 70.4
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.4e-80 302.0 256 71.1
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.9e-80 300.8 256 70.7
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 9.9e-80 300.8 255 71.4
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.3e-79 300.4 256 71.9
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.7e-79 300.1 258 67.4
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 8.4e-79 297.7 258 65.1
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 3.2e-78 295.8 252 73.4
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 5.4e-78 295.0 260 68.1
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 7.1e-78 294.7 258 65.1
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 9.3e-78 294.3 250 73.2
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.6e-77 293.5 256 67.6
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 2.1e-77 293.1 249 73.1
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.1e-77 293.1 255 66.3
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 2.7e-77 292.7 267 64.4
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 7.8e-77 291.2 256 65.2
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 7.8e-77 291.2 250 70.4
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.0e-76 290.8 256 65.6
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 1.3e-76 290.4 260 66.5
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.7e-76 290.0 252 71.4
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.9e-76 288.9 258 62.8
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 5.1e-76 288.5 250 72.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.6e-76 288.1 258 63.6
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.1e-75 287.3 255 64.7
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.5e-75 287.0 258 64.7
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.9e-75 286.6 258 62.4
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.9e-75 286.6 258 62.4
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 2.5e-75 286.2 258 62.4
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.3e-75 285.4 289 58.1
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.6e-74 283.5 258 64.3
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 6.2e-74 281.6 258 67.1
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 6.9e-73 278.1 257 63.4
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.0e-72 276.6 258 62.8
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 5.8e-72 275.0 265 62.6
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 5.8e-72 275.0 272 61.8
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 9.9e-72 274.2 256 61.7
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.9e-72 274.2 258 61.2
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 9.9e-72 274.2 265 61.5
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.3e-71 273.9 256 61.3
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.3e-71 273.9 254 63.4
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.3e-71 273.9 264 61.7
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.3e-71 273.9 255 62.7
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.3e-71 273.9 255 63.1
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.1e-70 270.8 252 63.1
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.9e-70 270.0 289 61.9
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 2.4e-70 269.6 259 68.3
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.2e-69 267.3 264 60.6
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 1.2e-69 267.3 259 59.5
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 2.1e-69 266.5 256 60.5
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 2.1e-69 266.5 258 61.6
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 2.7e-69 266.2 258 60.9
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 3.5e-69 265.8 259 62.5
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 3.5e-69 265.8 255 61.2
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 6.0e-69 265.0 254 61.4
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 1.0e-68 264.2 254 61.4
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.3e-68 263.8 251 61.8
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.7e-68 263.5 257 60.7
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 3.9e-68 262.3 258 60.5
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.9e-68 262.3 258 58.5
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 6.6e-68 261.5 258 60.5
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.5e-67 259.6 251 62.2
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.5e-67 259.6 258 58.9
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.6e-67 257.7 308 58.1
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 6.2e-66 255.0 264 65.2
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 6.2e-66 255.0 156 87.8
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 5.3e-65 251.9 268 63.4
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 2.0e-64 250.0 260 59.6
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 2.0e-64 250.0 254 57.1
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 3.4e-64 249.2 259 65.6
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 4.5e-64 248.8 256 58.2
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 9.9e-64 247.7 268 57.8
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.3e-63 247.3 252 58.7
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.7e-63 246.9 259 65.3
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 1.7e-63 246.9 258 58.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 2.9e-63 246.1 258 58.1
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 3.8e-63 245.7 379 49.9
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 4.9e-63 245.4 229 63.3
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 4.9e-63 245.4 268 59.0
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 4.9e-63 245.4 263 57.4
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 6.4e-63 245.0 260 64.2
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 8.4e-63 244.6 258 57.8
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.4e-62 243.8 251 57.4
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 3.2e-62 242.7 249 59.0
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 4.2e-62 242.3 258 57.4
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 5.5e-62 241.9 252 59.1
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 9.3e-62 241.1 266 58.6
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.2e-61 240.7 261 64.4
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.2e-61 240.7 261 60.9
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.2e-61 240.7 259 65.6
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 2.1e-61 240.0 252 57.9
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 3.5e-61 239.2 251 57.4
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 7.9e-61 238.0 227 63.9
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.0e-60 237.7 158 79.1
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.3e-60 236.5 181 74.0
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 3.0e-60 236.1 154 83.8
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 5.1e-60 235.3 299 51.5
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.5e-59 233.0 258 56.6
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 4.3e-59 232.3 274 54.4
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 7.4e-59 231.5 255 55.7
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 7.4e-59 231.5 254 55.5
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 8.1e-58 228.0 184 73.4
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.4e-57 227.3 254 54.7
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 3.1e-57 226.1 223 59.2
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 6.9e-57 224.9 255 53.7
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 3.0e-52 209.5 223 59.6
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 5.3e-49 198.7 272 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.9e-47 193.0 217 52.5
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.4e-46 190.7 261 48.7
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 2.7e-45 186.4 145 66.2
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 1.1e-41 174.5 222 52.3
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.4e-38 164.1 176 57.4
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 4.2e-38 162.5 198 50.0
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 2.7e-37 159.8 102 84.3
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.3e-36 156.8 258 43.8
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 3.9e-36 156.0 195 51.3
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 7.4e-35 151.8 183 55.7
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 8.2e-34 148.3 99 79.8
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.4e-33 146.7 127 63.8
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 4.1e-33 146.0 177 52.0
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 1.4e-28 131.0 208 46.6
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.5e-27 127.5 178 48.9
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.2e-26 123.6 142 52.8
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 4.0e-20 102.8 126 47.6
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 7.5e-19 98.6 105 56.2
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.7e-18 97.4 231 38.5
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 2.2e-18 97.1 65 76.9
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 9.1e-17 91.7 60 81.7
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.6e-16 90.9 58 82.8
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 2.7e-16 90.1 157 43.3
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 4.0e-12 76.3 64 62.5
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 1.3e-10 71.2 92 44.6
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 2.2e-10 70.5 132 35.6
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.4e-09 67.8 173 32.4
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.4e-09 65.9 40 75.0
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 7.0e-09 65.5 91 40.7
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 4.5e-08 62.8 86 46.5
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 1.5e-06 57.8 189 42.3
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 1.5e-06 57.8 189 42.3


User provided reference genes

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