Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 4.7e-73 277.7 135 100.0
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 5.6e-34 147.9 121 62.0
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 1.3e-25 120.2 113 50.4
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.9e-22 109.0 130 46.2
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 8.4e-22 107.5 130 46.2
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 2.1e-20 102.8 128 47.7
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.8e-19 99.8 120 48.3
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 1.5e-18 96.7 120 44.2
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.9e-18 96.3 125 43.2
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.6e-17 93.2 126 46.0
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.6e-17 92.0 125 44.0
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.8e-17 91.7 128 45.3
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.4e-16 90.1 120 48.3
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.8e-16 89.7 127 44.1
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 2.4e-16 89.4 127 44.1
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 1.5e-15 86.7 119 42.9
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.5e-15 86.7 124 46.0
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.5e-15 85.1 127 42.5
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 7.6e-15 84.3 121 40.5
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 7.6e-15 84.3 125 44.8
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.3e-14 83.6 120 40.0
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.4e-14 81.3 118 39.0
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.4e-14 81.3 116 43.1
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.4e-14 81.3 122 40.2
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 1.4e-13 80.1 118 39.0
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.2e-13 79.0 113 45.1
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 3.2e-13 79.0 113 45.1
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 3.2e-13 79.0 122 36.9
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.2e-13 78.6 125 40.8
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 4.2e-13 78.6 121 41.3
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 1.2e-12 77.0 123 41.5
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 2.1e-12 76.3 127 39.4
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 2.7e-12 75.9 106 39.6
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 1.8e-11 73.2 112 40.2
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.8e-11 73.2 117 37.6
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.8e-11 73.2 117 38.5
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.8e-11 73.2 121 38.8
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.8e-11 73.2 117 41.9
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 6.7e-11 71.2 73 49.3
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.7e-11 71.2 94 50.0
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 8.7e-11 70.9 134 37.3
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.1e-10 70.5 120 36.7
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.5e-10 70.1 128 40.6
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.5e-10 70.1 119 37.0
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.9e-10 69.7 113 41.6
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 2.5e-10 69.3 121 39.7
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 4.3e-10 68.6 101 40.6
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 5.6e-10 68.2 118 36.4
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 5.6e-10 68.2 121 37.2
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 7.4e-10 67.8 123 39.0
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 9.6e-10 67.4 103 38.8
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.3e-09 67.0 94 46.8
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 1.3e-09 67.0 110 42.7
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 1.3e-09 67.0 135 32.6
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 2.1e-09 66.2 113 38.1
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.8e-09 65.9 70 50.0
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 2.8e-09 65.9 113 38.9
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 3.7e-09 65.5 94 45.7
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.8e-09 65.1 95 38.9
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 6.2e-09 64.7 116 42.2
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 8.2e-09 64.3 121 34.7
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-08 63.9 55 56.4
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 1.4e-08 63.5 97 41.2
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.4e-08 63.5 121 33.9
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 1.8e-08 63.2 124 37.9
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 2.4e-08 62.8 41 63.4
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 3.1e-08 62.4 128 36.7
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 4.0e-08 62.0 109 36.7
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 5.3e-08 61.6 120 35.0
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 5.3e-08 61.6 123 34.1
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 9.0e-08 60.8 123 35.8
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 9.0e-08 60.8 98 36.7
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 1.2e-07 60.5 127 33.9
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 2.6e-07 59.3 51 56.9
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 3.4e-07 58.9 117 32.5
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 4.5e-07 58.5 107 36.4
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 4.5e-07 58.5 46 52.2
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 5.8e-07 58.2 108 35.2
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 7.6e-07 57.8 54 53.7
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 1.0e-06 57.4 44 56.8
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.0e-06 57.4 108 35.2
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.0e-06 57.4 108 35.2
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 1.3e-06 57.0 109 35.8
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 2.9e-06 55.8 34 64.7
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 2.9e-06 55.8 109 35.8
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 3.8e-06 55.5 107 35.5
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 3.8e-06 55.5 107 35.5
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 3.8e-06 55.5 34 64.7
Gohir.A11G095550 Gossypium hirsutum HOM05D066925 ORTHO05D047563 3.8e-06 55.5 114 33.3
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 3.8e-06 55.5 34 64.7
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 4.9e-06 55.1 126 31.0
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 4.9e-06 55.1 38 60.5
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 4.9e-06 55.1 38 60.5
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 6.5e-06 54.7 52 50.0
Gorai.007G106700 Gossypium raimondii HOM05D066925 ORTHO05D047563 6.5e-06 54.7 114 33.3
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 6.5e-06 54.7 92 40.2
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 6.5e-06 54.7 35 68.6
arahy.Tifrunner.gnm1.ann1.3XXF02 Arachis hypogaea HOM05D007041 ORTHO05D008036 8.4e-06 54.3 38 60.5
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 8.4e-06 54.3 33 66.7


User provided reference genes

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