Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 2.4e-47 191.8 97 100.0
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 7.9e-30 133.7 97 67.0
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 8.7e-29 130.2 95 62.1
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.9e-28 129.0 91 68.1
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 4.3e-28 127.9 95 66.3
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.8e-27 124.4 96 62.5
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 1.1e-26 123.2 98 60.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.8e-26 122.5 91 61.5
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 3.1e-26 121.7 97 60.8
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 9.0e-26 120.2 97 61.9
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 9.0e-26 120.2 91 60.4
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 2.6e-25 118.6 97 56.7
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 3.4e-25 118.2 100 58.0
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 4.5e-25 117.9 98 57.1
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.6e-25 117.1 100 58.0
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.6e-25 117.1 100 58.0
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 7.6e-25 117.1 100 58.0
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 9.9e-25 116.7 83 71.1
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.9e-23 112.5 86 61.6
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 3.2e-23 111.7 84 61.9
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 7.1e-23 110.5 97 55.7
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 9.3e-23 110.2 94 58.5
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.2e-22 109.8 99 54.5
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 2.1e-22 109.0 100 56.0
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 4.6e-22 107.8 95 52.6
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 6.0e-22 107.5 97 54.6
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.0e-21 105.1 97 54.6
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.0e-21 105.1 97 54.6
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.0e-21 105.1 97 54.6
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 3.0e-21 105.1 99 51.5
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 8.7e-21 103.6 95 56.8
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-20 102.8 83 57.8
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 3.3e-20 101.7 84 54.8
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 4.3e-20 101.3 98 50.0
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 5.6e-20 100.9 83 56.6
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 9.6e-20 100.1 93 57.0
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.3e-19 99.8 81 54.3
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.6e-19 99.4 107 51.4
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 1.6e-19 99.4 88 55.7
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 2.1e-19 99.0 99 48.5
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.1e-19 99.0 92 53.3
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 4.8e-19 97.8 99 48.5
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 4.8e-19 97.8 99 48.5
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 4.8e-19 97.8 82 56.1
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 6.2e-19 97.4 96 49.0
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 8.2e-19 97.1 88 54.5
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.1e-18 96.7 95 47.4
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 1.1e-18 96.7 96 50.0
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.1e-18 96.7 82 56.1
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.1e-18 96.7 82 53.7
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 5.3e-18 94.4 93 46.2
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 5.3e-18 94.4 80 50.0
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 5.3e-18 94.4 90 45.6
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 6.9e-18 94.0 83 51.8
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 9.0e-18 93.6 82 52.4
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 9.0e-18 93.6 95 45.3
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.2e-17 93.2 99 47.5
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 2.0e-17 92.4 93 46.2
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 2.0e-17 92.4 93 46.2
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.0e-17 92.4 85 49.4
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 2.0e-17 92.4 99 45.5
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 2.0e-17 92.4 84 51.2
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 2.6e-17 92.0 82 50.0
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.4e-17 91.7 93 47.3
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 4.5e-17 91.3 98 48.0
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 4.5e-17 91.3 81 51.9
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.8e-17 90.9 83 48.2
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 5.8e-17 90.9 92 46.7
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 5.8e-17 90.9 85 51.8
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 5.8e-17 90.9 90 48.9
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 5.8e-17 90.9 62 58.1
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 7.6e-17 90.5 85 48.2
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 7.6e-17 90.5 85 48.2
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 7.6e-17 90.5 96 47.9
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 7.6e-17 90.5 62 56.5
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 1.0e-16 90.1 80 43.8
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 1.3e-16 89.7 62 59.7
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.3e-16 89.7 82 51.2
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.3e-16 89.7 94 51.1
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.3e-16 89.7 92 45.7
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 1.7e-16 89.4 93 47.3
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.7e-16 89.4 69 53.6
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.7e-16 89.4 96 44.8
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.7e-16 89.4 84 48.8
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.7e-16 89.4 65 56.9
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 2.2e-16 89.0 95 44.2
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 3.8e-16 88.2 84 50.0
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.9e-16 87.8 85 45.9
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 4.9e-16 87.8 93 45.2
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 4.9e-16 87.8 90 44.4
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 6.5e-16 87.4 93 45.2
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 6.5e-16 87.4 93 45.2
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 6.5e-16 87.4 93 45.2
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 6.5e-16 87.4 78 51.3
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 8.4e-16 87.0 98 40.8
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 8.4e-16 87.0 98 46.9
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.1e-15 86.7 86 50.0
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 1.4e-15 86.3 90 45.6
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 1.4e-15 86.3 65 55.4
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.4e-15 86.3 93 48.4
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 2.5e-15 85.5 82 48.8
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 3.2e-15 85.1 85 47.1
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 3.2e-15 85.1 98 39.8
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 4.2e-15 84.7 80 45.0
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 7.1e-15 84.0 67 52.2
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 1.2e-14 83.2 89 46.1
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.2e-14 83.2 63 50.8
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.7e-14 82.0 63 50.8
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 2.7e-14 82.0 63 50.8
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 4.6e-14 81.3 95 45.3
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 6.0e-14 80.9 90 45.6
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 7.9e-14 80.5 91 44.0
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.0e-13 80.1 92 40.2
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.0e-13 78.6 52 57.7
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 3.9e-13 78.2 86 47.7
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 8.7e-13 77.0 94 40.4
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 4.3e-12 74.7 80 43.8
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 4.3e-12 74.7 66 47.0
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.7e-12 74.3 91 40.7
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 7.4e-12 73.9 91 40.7
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 9.7e-12 73.6 89 39.3
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 9.7e-12 73.6 96 36.5
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.3e-11 73.2 90 42.2
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.6e-11 72.8 96 39.6
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 2.2e-11 72.4 97 40.2
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 2.2e-11 72.4 97 40.2
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.8e-11 72.0 91 38.5
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 3.7e-11 71.6 98 37.8
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 3.7e-11 71.6 98 37.8
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 3.7e-11 71.6 91 42.9
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 4.8e-11 71.2 93 36.6
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.3e-10 67.8 95 40.0
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.9e-10 67.4 83 41.0
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.6e-09 65.5 79 36.7
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 3.8e-08 61.6 88 38.6
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 8.5e-08 60.5 61 44.3
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 2.1e-06 55.8 61 41.0
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 3.6e-06 55.1 87 39.1
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 7.9e-06 53.9 108 35.2


User provided reference genes

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