Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.3e-157 559.7 292 100.0
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.1e-135 486.9 290 87.9
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.8e-131 472.2 295 81.7
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.9e-127 459.5 289 82.0
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 4.8e-123 444.9 291 81.1
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.9e-122 441.0 287 79.8
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.2e-121 440.3 287 79.4
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.9e-117 425.2 284 76.1
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 6.7e-117 424.5 289 75.4
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 6.7e-117 424.5 287 78.0
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.5e-116 423.3 287 78.0
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 7.4e-116 421.0 290 75.5
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.3e-115 420.2 287 77.4
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.3e-115 420.2 284 75.7
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.7e-115 419.9 289 76.8
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 6.3e-115 417.9 287 76.0
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 4.1e-114 415.2 287 75.6
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 9.1e-114 414.1 287 75.6
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.0e-112 408.3 289 73.0
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 5.0e-112 408.3 287 73.9
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 5.0e-112 408.3 287 72.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.1e-111 407.1 290 73.1
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.9e-111 406.4 288 70.8
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 3.2e-111 405.6 287 71.8
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.2e-110 403.7 290 72.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.2e-110 403.7 288 73.6
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.2e-110 403.7 287 73.9
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.7e-110 402.5 288 73.3
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 3.6e-110 402.1 288 73.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.6e-110 402.1 285 69.8
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 1.0e-109 400.6 287 74.6
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 2.3e-109 399.4 287 72.8
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.3e-109 399.4 288 72.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 3.0e-109 399.1 290 70.7
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 5.2e-109 398.3 287 70.7
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 8.8e-109 397.5 289 73.7
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-108 397.1 288 72.6
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 1.1e-108 397.1 289 71.6
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.5e-108 396.7 289 72.3
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.5e-108 396.7 287 71.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.0e-108 396.4 287 73.5
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 2.6e-108 396.0 292 71.9
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 3.7e-107 392.1 284 69.0
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 3.7e-107 392.1 291 68.4
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 6.3e-107 391.3 290 68.3
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 6.3e-107 391.3 290 71.4
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.8e-106 389.8 288 70.5
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.4e-106 389.4 284 68.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 4.1e-106 388.7 286 70.3
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.3e-106 388.3 288 70.1
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 7.0e-106 387.9 290 67.6
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.2e-105 387.1 290 67.6
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 2.0e-105 386.3 287 71.8
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 7.7e-105 384.4 290 69.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.7e-104 383.3 286 67.8
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 2.2e-104 382.9 284 68.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 3.8e-104 382.1 286 69.9
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.2e-103 379.0 282 69.5
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 3.2e-103 379.0 292 68.2
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 7.2e-103 377.9 290 66.9
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.1e-102 376.3 266 73.3
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 3.6e-102 375.6 286 69.6
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 4.7e-102 375.2 287 68.3
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 4.7e-102 375.2 284 68.0
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 6.1e-102 374.8 291 67.4
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 8.0e-102 374.4 287 66.9
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.0e-101 374.0 282 69.1
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.0e-101 374.0 287 67.9
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.3e-101 372.9 298 66.4
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.0e-100 369.8 279 68.8
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 4.4e-100 368.6 230 80.9
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 9.7e-100 367.5 259 74.1
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.8e-99 365.9 251 75.3
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.8e-99 365.9 279 68.5
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.4e-98 363.6 226 81.4
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.8e-98 363.2 290 67.9
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.1e-98 362.1 288 66.7
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 5.3e-98 361.7 287 65.2
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 9.1e-98 360.9 316 62.3
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.0e-96 357.5 284 67.6
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.0e-96 357.5 286 68.5
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.3e-96 357.1 287 64.8
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.7e-96 356.7 284 67.6
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.2e-96 356.3 227 80.2
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.9e-96 355.9 284 65.5
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.1e-95 354.0 216 80.1
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.5e-95 352.8 285 66.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.2e-95 352.4 283 65.4
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 3.2e-95 352.4 268 68.3
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.1e-94 349.7 284 66.2
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.7e-94 349.4 284 65.5
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-94 349.4 284 65.5
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.7e-94 349.4 284 65.5
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 8.0e-94 347.8 239 74.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.4e-93 347.1 284 65.1
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.4e-93 347.1 217 82.9
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.8e-93 346.7 284 65.1
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.8e-93 346.7 284 65.1
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.0e-93 345.9 284 65.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.0e-93 345.9 284 65.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.0e-93 345.9 284 65.5
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.2e-92 344.0 284 65.1
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.5e-92 343.6 287 62.4
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.5e-92 343.6 286 65.0
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 3.4e-92 342.4 284 64.8
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 3.4e-92 342.4 283 65.0
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 4.4e-92 342.0 289 63.7
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 5.7e-92 341.7 252 69.8
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 2.8e-91 339.3 287 64.8
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.6e-89 333.6 284 64.1
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.1e-86 323.2 243 67.9
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.7e-86 322.8 259 64.5
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 3.6e-86 322.4 226 71.2
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 3.0e-85 319.3 250 66.8
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 5.7e-84 315.1 284 59.2
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 5.7e-84 315.1 226 72.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 9.8e-84 314.3 226 72.1
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.1e-79 300.8 292 52.1
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 9.5e-79 297.7 243 63.0
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.4e-77 293.9 240 62.9
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 7.5e-76 288.1 289 51.6
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-71 274.2 216 70.8
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.1e-71 274.2 270 53.0
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 5.0e-64 248.8 259 56.0
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.9e-63 246.9 217 65.4
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.9e-61 238.0 230 60.9
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.0e-60 236.9 272 52.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.2e-58 228.0 197 53.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-57 227.3 197 53.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-56 224.6 197 52.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.3e-56 223.4 197 52.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.6e-56 221.5 148 74.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.6e-55 218.8 136 79.4
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-48 197.6 171 63.7
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.3e-48 196.8 145 69.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-45 187.6 197 46.2
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-43 178.3 188 50.5
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-36 157.9 227 48.5
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.1e-34 148.7 119 68.9
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-33 147.9 226 48.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.7e-32 141.7 182 41.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 9.6e-31 138.3 83 83.1
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.0e-28 130.6 199 37.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 4.9e-27 125.9 76 77.6
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.1e-26 124.8 99 64.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.1e-26 124.8 99 64.6
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.1e-26 124.8 190 40.0
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 4.3e-23 112.8 217 32.3
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-20 103.6 59 84.7
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.3e-19 101.3 58 82.8
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.9e-19 100.1 56 83.9
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.1e-18 98.2 58 81.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.3e-16 91.3 64 73.4
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 8.7e-16 88.6 91 49.5
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.3e-14 82.4 54 74.1
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 4.5e-12 76.3 51 68.6
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.6e-09 67.8 98 43.9
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 3.3e-07 60.1 62 54.8
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 3.3e-07 60.1 62 54.8
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 1.6e-06 57.8 63 50.8
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 2.2e-06 57.4 46 58.7


User provided reference genes

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