Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 0.0e+00 2483.8 1296 100.0
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 0.0e+00 1447.2 995 75.0
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 2.2e-308 1062.8 1313 49.8
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 9.1e-283 977.6 1308 48.2
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 4.2e-280 968.8 1301 48.3
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 1.0e-270 937.6 1321 47.6
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 9.2e-267 924.5 1346 45.2
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 2.6e-213 746.9 1268 41.0
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.5e-208 731.1 1324 40.3
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 1.0e-201 708.4 1345 40.5
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 4.3e-200 703.0 1005 45.3
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 2.5e-195 687.2 1321 39.6
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 1.6e-181 641.3 1052 43.4
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 3.5e-181 640.2 1277 38.4
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 2.2e-175 620.9 1327 36.3
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 4.8e-175 619.8 1346 36.0
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 4.5e-173 613.2 1331 36.3
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 2.9e-172 610.5 1356 35.5
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 1.0e-169 602.1 1342 36.1
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 6.8e-169 599.4 1310 37.0
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 1.5e-168 598.2 1318 36.7
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 2.0e-165 587.8 1369 35.1
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.7e-156 558.1 1317 34.8
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 1.1e-155 555.4 1317 34.7
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 6.1e-154 549.7 1317 34.8
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 5.9e-149 533.1 1335 34.7
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 1.1e-147 528.9 1388 34.1
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.1e-147 528.9 1382 34.0
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.1e-146 524.6 1209 35.2
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 9.8e-144 515.8 994 38.7
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.7e-143 515.0 1046 36.8
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 5.4e-142 510.0 863 40.0
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.7e-140 505.0 973 38.6
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 2.1e-130 471.5 1041 36.0
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 2.7e-125 454.5 1316 32.1
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 1.1e-123 449.1 1311 31.4
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 7.1e-118 429.9 1304 31.7
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 2.7e-117 427.9 1266 33.4
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 8.1e-106 389.8 1308 30.0
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 1.0e-100 372.9 1313 28.5
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 3.9e-100 370.9 1115 31.0
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 7.4e-99 366.7 1329 29.3
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 3.7e-98 364.4 1315 28.7
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 6.5e-95 353.6 1284 29.5
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 1.9e-94 352.1 877 36.3
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 5.3e-89 334.0 1315 27.7
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 2.2e-87 328.6 1316 29.0
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 2.2e-87 328.6 1288 29.9
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 2.2e-87 328.6 1351 28.6
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 2.5e-86 325.1 1273 30.0
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 1.8e-84 318.9 1459 28.4
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 2.3e-84 318.5 1298 29.9
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 3.3e-83 314.7 1321 28.4
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 9.7e-83 313.2 1336 29.0
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 9.7e-83 313.2 1202 30.1
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 2.4e-81 308.5 1183 29.4
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 1.7e-79 302.4 1205 30.0
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 7.2e-78 297.0 1204 29.1
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 5.1e-76 290.8 1419 27.1
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 2.6e-75 288.5 1447 26.2
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.3e-74 286.2 1256 29.4
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 6.9e-73 280.4 1310 27.2
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 3.9e-68 264.6 1312 27.6
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.1e-67 263.1 1305 27.0
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 6.3e-66 257.3 1266 27.3
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 5.3e-65 254.2 1321 26.8
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 3.8e-63 248.1 1329 27.2
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 1.8e-60 239.2 1308 24.8
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.2e-59 236.5 1328 26.1
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 1.1e-57 229.9 1290 26.0
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 2.9e-55 221.9 1316 27.4
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.9e-55 221.9 1190 27.3
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 1.1e-54 219.9 808 29.5
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 4.2e-54 218.0 1152 26.2
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 1.2e-53 216.5 1290 25.4
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 3.6e-53 214.9 787 29.7
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.8e-52 212.6 1186 26.5
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 8.8e-52 210.3 1049 27.7
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 2.0e-51 209.1 1087 26.5
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 3.4e-51 208.4 1319 27.4
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 1.8e-49 202.6 812 28.1
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 5.0e-47 194.5 1304 25.6
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 1.3e-42 179.9 1148 25.6
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 2.8e-42 178.7 1039 25.7
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 3.0e-36 158.7 239 46.9
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 2.8e-29 135.6 215 42.3
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 7.5e-27 127.5 174 42.5
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 1.4e-25 123.2 714 29.1
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 2.0e-24 119.4 520 27.1
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 2.3e-23 115.9 307 33.6
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.2e-21 110.2 225 37.3
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.6e-21 109.8 252 36.5
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 3.6e-21 108.6 376 31.6
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 8.9e-20 104.0 157 40.1
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 2.2e-18 99.4 206 37.4
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 4.6e-16 91.7 99 51.5
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 3.3e-14 85.5 187 36.9
HPP92_005185 Vanilla planifolia HOM05D006994 ORTHO05D008229 1.6e-13 83.2 326 26.7
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 3.8e-10 72.0 76 51.3
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 1.4e-09 70.1 70 47.1
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.4e-09 70.1 81 45.7
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 1.4e-09 70.1 131 35.9
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 1.9e-09 69.7 54 55.6
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 5.4e-09 68.2 109 38.5
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 9.2e-09 67.4 507 24.3
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 7.8e-08 64.3 63 57.1
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 1.0e-07 63.9 176 33.0
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.3e-07 62.8 126 39.7
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 3.9e-07 62.0 80 45.0
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.9e-07 62.0 169 33.1
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.9e-07 62.0 169 33.1
THA.LOC104804894 Tarenaya hassleriana HOM05D014107 ORTHO05D008229 4.3e-06 58.5 541 22.7


User provided reference genes

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