Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 0.0e+00 1087.4 516 100.0
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.1e-210 736.9 432 80.3
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.6e-206 721.8 432 79.4
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.8e-205 719.5 432 78.5
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 8.9e-205 717.2 432 78.2
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.0e-204 716.1 386 88.1
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 5.0e-200 701.4 432 77.5
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 5.0e-200 701.4 434 76.3
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.1e-198 694.5 434 76.5
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.5e-196 689.9 436 75.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 6.4e-195 684.5 435 74.7
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.7e-192 676.4 436 72.2
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.0e-192 675.6 433 73.4
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 8.6e-192 674.1 439 72.9
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.1e-191 673.7 432 74.3
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.5e-191 673.3 434 73.5
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 4.3e-191 671.8 432 72.9
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 9.5e-191 670.6 434 73.7
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-190 670.2 436 72.9
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 2.1e-190 669.5 436 73.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.7e-190 668.3 437 72.8
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.1e-189 667.2 439 72.4
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 5.2e-189 664.8 440 71.8
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 8.9e-189 664.1 437 72.5
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 4.4e-188 661.8 442 71.5
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 9.8e-188 660.6 438 71.9
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.7e-187 659.8 387 80.6
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.7e-187 659.8 436 72.0
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 4.9e-187 658.3 457 69.1
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.5e-185 652.1 436 71.8
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 6.0e-185 651.4 435 71.3
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 7.8e-185 651.0 436 71.3
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 7.8e-185 651.0 436 71.8
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.3e-184 650.2 433 71.6
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 6.6e-184 647.9 435 71.3
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.1e-183 647.1 438 71.2
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.5e-183 646.7 437 71.4
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.6e-182 643.3 434 70.5
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 2.1e-182 642.9 442 70.4
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.6e-182 642.1 433 70.7
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.7e-182 641.7 434 71.2
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 4.7e-182 641.7 436 70.4
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 8.1e-182 641.0 435 71.3
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.1e-181 640.6 434 71.0
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.1e-181 639.0 443 70.9
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.2e-180 637.1 434 70.7
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.5e-180 636.7 436 71.1
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.0e-180 636.3 434 70.7
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 2.6e-180 636.0 433 69.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 3.4e-180 635.6 436 70.9
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 4.4e-180 635.2 435 70.6
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 5.8e-180 634.8 443 70.2
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 9.9e-180 634.0 442 71.0
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.3e-179 633.6 432 70.1
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 2.9e-179 632.5 436 70.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.9e-179 632.5 440 70.5
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 3.7e-179 632.1 437 70.7
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.4e-178 630.2 433 69.1
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.2e-178 629.0 439 69.0
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 5.4e-178 628.2 437 69.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 7.1e-178 627.9 405 75.6
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 7.1e-178 627.9 475 65.1
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 9.2e-178 627.5 477 63.9
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 6.0e-177 624.8 475 64.2
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.0e-176 624.0 446 67.7
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 1.7e-176 623.2 387 77.3
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.7e-176 623.2 475 63.8
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 2.3e-176 622.9 485 64.1
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.3e-176 622.9 441 70.1
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 3.9e-176 622.1 435 67.6
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 5.1e-176 621.7 475 63.6
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 7.3e-175 617.8 439 67.9
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.2e-174 617.1 434 68.2
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 2.1e-174 616.3 503 60.8
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.1e-174 616.3 486 63.6
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 2.1e-174 616.3 476 63.2
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.6e-174 615.5 436 67.7
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.4e-173 613.6 435 68.0
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.8e-173 611.3 475 65.1
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 9.9e-172 607.4 434 66.8
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.2e-171 606.3 473 64.7
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.4e-171 604.4 456 66.7
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.9e-170 603.2 436 66.3
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.6e-169 598.6 499 60.9
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.0e-168 597.4 391 72.6
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.8e-166 589.3 439 65.4
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 6.2e-166 588.2 405 69.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 9.9e-164 580.9 433 64.2
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.4e-163 578.2 437 64.5
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 4.2e-162 575.5 433 63.7
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.1e-162 574.7 438 63.7
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 7.1e-162 574.7 440 64.1
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 4.6e-161 572.0 439 65.8
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 6.0e-161 571.6 433 64.2
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 7.8e-161 571.2 440 63.4
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 3.9e-160 568.9 431 63.6
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.6e-158 563.5 433 64.4
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.6e-158 562.4 432 65.0
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 5.3e-157 558.5 431 63.1
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 5.3e-157 558.5 443 63.9
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 4.5e-156 555.4 433 61.9
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 9.9e-156 554.3 433 61.7
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 6.4e-155 551.6 443 61.9
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.1e-154 550.8 436 63.5
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 4.2e-154 548.9 433 61.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 5.4e-154 548.5 432 61.6
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 9.3e-154 547.7 432 60.6
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 9.3e-154 547.7 438 62.6
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.2e-153 547.4 438 61.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.6e-153 545.4 438 62.3
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.8e-152 543.5 433 60.5
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.9e-152 542.3 431 61.7
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 8.7e-152 541.2 441 62.1
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.1e-151 540.8 432 60.6
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.9e-151 540.0 347 74.1
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.3e-150 537.3 432 60.2
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.4e-149 533.9 435 60.0
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.1e-149 532.7 435 59.8
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.0e-148 530.0 435 59.3
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.0e-148 530.0 435 59.3
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.8e-144 516.9 435 58.6
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.5e-143 513.8 458 57.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.0e-139 501.1 450 55.1
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 2.9e-139 499.6 456 56.1
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.1e-133 479.2 353 65.2
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 6.9e-133 478.4 467 52.5
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.6e-132 476.5 388 59.8
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 2.2e-126 456.8 250 82.8
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.7e-123 447.2 435 53.8
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.2e-122 443.0 295 71.5
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.3e-119 433.0 241 80.9
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 4.5e-116 422.5 246 77.6
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 8.8e-112 408.3 276 66.7
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.2e-107 393.7 270 67.0
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.0e-104 384.8 296 66.9
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 3.3e-103 379.8 511 42.5
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 8.3e-102 375.2 259 65.6
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.1e-101 374.8 254 65.4
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 4.5e-100 369.4 273 64.5
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 2.0e-95 354.0 262 61.5
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.5e-90 337.8 437 41.4
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.2e-89 334.7 507 38.7
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.8e-88 330.9 372 49.5
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.1e-69 268.5 431 40.6
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.2e-65 255.0 188 67.6
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 6.9e-48 196.1 164 59.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.3e-43 181.8 191 56.5
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.7e-43 181.4 140 64.3
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-40 171.0 144 58.3
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-40 171.0 144 58.3
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.1e-40 170.6 136 64.7
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.3e-40 169.9 95 80.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.8e-39 166.4 93 79.6
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.6e-39 166.0 131 64.9
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 9.9e-39 165.6 108 71.3
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.2e-38 164.5 93 78.5
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.9e-38 163.3 95 76.8
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.1e-35 153.3 178 47.8
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 8.7e-35 152.5 188 46.8
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.2e-30 137.9 153 49.7
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 1.8e-27 128.3 165 42.4
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.0e-24 115.9 90 56.7
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.3e-19 102.1 66 69.7
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 9.4e-13 79.3 45 73.3
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.2e-12 79.0 45 77.8
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.2e-12 79.0 45 77.8


User provided reference genes

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