Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.4e-221 772.7 395 100.0
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 5.8e-156 554.7 384 74.5
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 6.2e-142 508.1 384 70.6
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.5e-140 503.4 383 69.5
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 2.0e-140 503.1 381 67.7
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.7e-139 500.0 381 67.5
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 9.4e-130 467.6 384 64.6
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 3.9e-128 462.2 387 63.8
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 1.9e-127 459.9 391 65.7
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.4e-125 453.8 388 63.7
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.2e-124 450.7 389 63.0
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 1.5e-124 450.3 387 61.8
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.7e-123 446.8 387 63.6
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.9e-122 443.4 387 60.7
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.5e-122 443.0 388 61.3
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 3.2e-122 442.6 387 60.7
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.1e-121 439.9 381 65.4
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.0e-120 437.6 397 62.0
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.3e-120 436.4 384 62.5
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 5.1e-120 435.3 392 63.8
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 7.4e-119 431.4 380 62.4
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 9.7e-119 431.0 383 61.9
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 1.3e-118 430.6 381 62.7
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 4.8e-118 428.7 395 62.3
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.4e-117 427.2 384 59.9
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.8e-117 426.8 392 62.0
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.8e-117 426.8 389 60.4
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 4.1e-117 425.6 392 62.0
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.5e-116 423.7 374 62.3
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.4e-116 422.5 385 60.0
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 5.9e-116 421.8 387 60.5
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 5.9e-116 421.8 383 60.3
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.9e-116 421.8 383 60.6
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.0e-115 421.0 380 62.4
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-114 417.5 382 60.2
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 1.4e-114 417.2 382 62.3
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 3.2e-114 416.0 387 58.9
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.2e-114 415.6 382 60.2
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 6.7e-112 408.3 387 57.4
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 8.8e-112 407.9 386 58.3
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 5.7e-111 405.2 379 59.1
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.2e-110 403.3 393 58.8
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.7e-110 402.5 393 58.8
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.1e-109 401.0 390 58.2
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 4.1e-109 399.1 391 57.8
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 4.1e-109 399.1 373 60.1
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.6e-108 397.1 391 57.3
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 3.5e-108 396.0 391 57.3
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.3e-107 394.0 394 56.9
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.4e-104 384.0 390 54.4
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 7.5e-103 378.3 389 55.5
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 3.7e-102 375.9 382 55.0
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 4.8e-102 375.6 379 57.0
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 6.3e-102 375.2 381 54.1
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 1.8e-101 373.6 364 59.6
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 4.1e-101 372.5 388 53.6
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.2e-100 370.9 388 54.6
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.9e-99 366.3 389 55.3
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 6.5e-99 365.2 416 52.2
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 3.2e-98 362.8 351 56.7
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 5.5e-98 362.1 384 51.8
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 5.5e-98 362.1 385 54.8
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.1e-97 360.1 382 55.8
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.8e-96 357.1 379 53.8
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.2e-95 354.4 379 54.9
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.5e-95 354.0 382 52.4
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.6e-95 353.2 382 55.0
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.3e-94 350.9 327 56.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.2e-94 350.1 282 64.5
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.1e-93 347.8 325 56.9
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.4e-93 345.5 382 54.2
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 9.1e-93 344.7 382 53.7
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 4.5e-92 342.4 380 52.4
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 2.3e-91 340.1 378 51.9
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.5e-90 337.4 379 51.7
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 3.3e-90 336.3 318 57.9
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 3.3e-90 336.3 378 52.4
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 9.5e-90 334.7 378 52.9
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.2e-89 334.3 379 50.7
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.2e-89 334.3 379 52.5
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 6.1e-89 332.0 379 51.2
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 5.7e-87 325.5 380 51.3
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 5.7e-87 325.5 380 51.3
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 7.5e-87 325.1 378 50.3
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 9.8e-87 324.7 379 50.7
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 9.8e-87 324.7 379 50.7
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 2.2e-86 323.6 379 50.7
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.8e-86 323.2 378 49.5
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 6.3e-86 322.0 379 50.1
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.4e-85 320.9 326 57.4
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 3.1e-85 319.7 370 51.9
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 4.1e-85 319.3 326 57.7
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 5.0e-83 312.4 384 46.6
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 1.6e-81 307.4 379 50.4
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 6.1e-81 305.4 378 50.3
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.8e-80 303.9 379 48.8
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.0e-75 288.1 329 53.2
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 2.5e-74 283.5 208 67.8
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.1e-72 278.1 233 62.2
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.9e-69 267.3 345 46.7
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.1e-68 263.8 269 55.0
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 7.3e-66 255.4 213 66.2
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.3e-64 250.4 166 75.9
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 4.0e-64 249.6 271 56.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 6.8e-64 248.8 187 66.8
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 3.4e-63 246.5 365 46.0
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.7e-60 236.9 196 62.8
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 4.7e-57 226.1 155 73.5
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 6.4e-54 215.7 351 39.6
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 4.2e-53 213.0 156 67.9
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 3.5e-52 209.9 348 37.9
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 3.0e-51 206.8 327 39.4
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 9.6e-50 201.8 400 35.2
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 9.0e-48 195.3 384 34.1
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.1e-44 184.1 271 45.8
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.1e-42 178.3 288 38.5
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 2.1e-41 174.1 204 50.5
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.3e-33 148.3 191 47.6
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.6e-33 147.9 242 43.4
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 4.5e-31 139.8 191 39.3
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 3.2e-21 107.1 106 53.8
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.6e-20 103.2 106 55.7
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.8e-16 91.3 126 47.6
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.2e-15 88.6 181 40.9
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.8e-09 66.6 93 49.5
Cre03.g197550 Chlamydomonas reinhardtii HOM05D005606 ORTHO05D006446 8.2e-09 65.9 201 29.4
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 3.1e-08 63.9 151 33.8
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.3e-06 58.5 81 45.7


User provided reference genes

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