Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 0.0e+00 1094.7 549 100.0
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 0.0e+00 1090.5 549 99.6
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.2e-289 996.9 549 90.7
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.2e-289 996.9 549 90.7
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 4.2e-245 851.3 558 75.3
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.6e-242 840.9 556 75.4
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 6.9e-240 833.9 549 74.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-237 826.2 549 78.0
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 2.5e-237 825.5 573 71.4
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.3e-234 815.1 552 73.7
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 2.2e-233 812.4 551 74.2
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.0e-231 805.8 549 73.8
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.5e-231 804.7 552 72.3
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.0e-230 803.5 547 72.6
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.0e-230 803.5 547 73.1
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.3e-230 803.1 551 72.4
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 5.5e-229 797.7 551 72.4
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 4.3e-226 788.1 553 72.3
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.7e-225 786.2 544 71.5
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.6e-223 778.9 561 70.4
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.6e-223 778.9 554 70.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 3.4e-223 778.5 544 70.4
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.4e-221 773.1 546 70.5
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.6e-220 769.6 559 69.1
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.7e-220 768.8 548 70.1
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.5e-218 763.1 553 70.2
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.0e-218 762.7 556 71.0
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 4.4e-218 761.5 551 71.1
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 2.2e-217 759.2 550 68.0
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.3e-217 757.7 560 69.3
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.3e-216 754.6 549 67.9
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.2e-215 753.4 546 69.2
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.6e-215 752.3 552 69.6
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 2.6e-215 752.3 563 67.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.4e-215 751.9 542 70.1
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 4.5e-215 751.5 554 68.4
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.7e-214 749.6 550 67.5
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.0e-214 748.0 545 70.6
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 6.5e-214 747.7 564 67.7
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.2e-213 745.3 551 68.6
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 4.2e-213 745.0 559 67.4
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 5.5e-213 744.6 552 69.6
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 5.5e-213 744.6 555 68.1
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 4.7e-212 741.5 553 67.3
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 8.0e-212 740.7 554 68.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 8.0e-212 740.7 572 67.0
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.0e-211 738.8 553 67.3
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 6.7e-211 737.6 548 68.6
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.4e-210 734.9 546 67.4
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.3e-209 733.4 564 65.4
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 2.4e-208 729.2 552 66.7
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 7.0e-208 727.6 554 66.4
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.2e-207 726.9 551 67.7
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 5.9e-207 724.5 542 66.2
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 7.7e-207 724.2 546 67.2
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 6.5e-206 721.1 485 72.2
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 8.5e-206 720.7 547 67.3
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.1e-205 720.3 552 64.9
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.5e-205 718.0 560 66.1
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 7.2e-205 717.6 544 66.5
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.6e-204 715.3 568 65.1
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 4.7e-204 714.9 557 66.6
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.4e-203 713.4 559 65.5
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.3e-203 712.6 562 65.7
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 4.0e-203 711.8 552 66.7
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.8e-201 705.7 552 67.9
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.8e-201 705.7 546 64.8
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 4.8e-201 704.9 548 64.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 8.2e-201 704.1 445 77.5
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-200 703.7 520 68.5
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 5.9e-199 698.0 563 63.8
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 7.7e-199 697.6 543 65.2
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.0e-198 697.2 574 63.9
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-198 696.8 576 61.6
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.2e-198 696.0 572 63.1
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.9e-198 695.7 569 62.7
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-197 693.7 575 63.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.1e-197 693.7 575 63.5
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-197 693.3 575 63.5
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 9.4e-197 690.6 571 63.4
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 9.4e-197 690.6 577 63.3
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.1e-196 689.5 400 81.5
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-194 683.7 462 73.2
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.0e-194 682.9 572 61.9
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.6e-194 682.6 568 62.1
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 2.6e-194 682.6 572 62.6
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.6e-194 682.6 561 62.4
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-192 677.2 552 63.6
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-192 676.4 568 62.0
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-192 676.0 555 63.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 2.4e-192 676.0 571 61.3
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 3.5e-191 672.2 552 63.4
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.5e-191 671.8 556 61.0
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.3e-190 669.5 571 62.0
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 3.8e-190 668.7 563 61.1
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 5.0e-190 668.3 552 62.9
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.1e-189 667.2 555 62.3
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.9e-189 666.4 556 61.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.4e-187 660.2 556 61.9
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 2.3e-187 659.4 548 62.6
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.5e-186 656.8 570 60.9
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-184 650.2 566 60.2
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.6e-183 646.7 566 58.3
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 5.9e-183 644.8 550 62.7
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 4.3e-181 638.6 545 60.4
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 7.3e-181 637.9 429 73.2
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 8.9e-179 630.9 567 59.3
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 2.6e-178 629.4 560 60.2
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 3.4e-178 629.0 551 60.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 3.4e-178 629.0 555 60.2
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.4e-176 623.6 448 66.5
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.2e-176 622.5 555 60.9
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 3.0e-174 615.9 579 55.6
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 9.5e-173 610.9 548 59.1
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 6.2e-172 608.2 533 60.8
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.5e-162 577.0 551 55.7
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 2.6e-162 576.2 402 69.4
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 2.4e-160 569.7 384 71.6
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.1e-159 566.6 501 59.3
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.5e-157 559.7 544 58.1
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.3e-157 558.9 534 56.4
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 2.0e-154 550.1 337 76.6
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 7.3e-149 531.6 555 54.1
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.5e-141 506.5 301 79.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.3e-134 484.2 389 65.0
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.3e-126 457.6 475 54.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.8e-123 447.2 476 45.2
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 4.2e-112 409.5 513 48.3
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.6e-111 406.0 280 70.0
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 9.4e-104 381.7 325 63.1
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.2e-97 360.5 411 42.6
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 7.0e-91 339.0 197 78.2
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.5e-88 330.5 210 72.4
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.6e-87 326.6 357 50.7
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 8.0e-87 325.5 369 47.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.8e-76 290.4 155 87.7
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 5.0e-57 226.5 225 56.0
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.1e-56 225.3 199 58.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.7e-52 211.5 283 47.3
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.2e-46 189.9 169 58.0
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 6.8e-46 189.5 287 43.6
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 5.4e-35 153.3 91 79.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.6e-34 150.2 91 78.0
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 8.1e-31 139.4 470 24.9
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.3e-24 117.5 79 69.6
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 5.6e-24 116.7 69 79.7
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.3e-24 116.3 76 75.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.1e-23 114.8 69 78.3
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.2e-21 109.0 115 46.1
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.3e-20 105.5 151 43.0
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.4e-19 102.1 180 31.1
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.5e-16 92.0 164 39.0
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.4e-14 84.7 51 78.4
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.5e-13 82.0 73 52.1
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.9e-12 77.0 75 54.7
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.3e-08 63.9 53 58.5


User provided reference genes

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