Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.5e-124 449.5 225 100.0
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 5.0e-88 328.2 197 82.2
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.4e-85 320.1 200 82.0
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 4.0e-85 318.5 197 81.2
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.7e-83 312.0 195 79.0
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 3.2e-82 308.9 199 78.4
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 4.1e-82 308.5 200 77.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.2e-81 307.0 214 72.9
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.0e-80 303.9 206 73.8
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 6.6e-80 301.2 197 75.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.5e-79 300.1 198 75.8
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.3e-79 298.5 198 76.3
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.2e-78 297.0 198 74.7
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 4.7e-78 295.0 198 76.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 6.2e-78 294.7 200 75.5
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 8.1e-78 294.3 199 74.4
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.8e-77 293.1 198 75.3
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 4.0e-77 292.0 193 75.1
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 5.2e-77 291.6 198 74.2
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 6.8e-77 291.2 197 72.1
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 5.8e-76 288.1 194 75.8
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 4.9e-75 285.0 199 73.4
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 4.9e-75 285.0 195 72.8
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.4e-75 284.6 197 72.6
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.9e-74 283.1 197 71.6
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.4e-74 282.7 195 72.8
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 5.4e-74 281.6 197 71.6
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 5.4e-74 281.6 197 71.6
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 7.1e-74 281.2 203 69.5
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.1e-73 279.6 207 69.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 2.1e-73 279.6 197 70.6
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.7e-73 279.3 197 71.6
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.7e-73 279.3 200 73.5
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.7e-73 279.3 204 70.1
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 3.5e-73 278.9 198 71.2
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 4.6e-73 278.5 204 69.6
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 7.8e-73 277.7 199 69.8
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-72 276.9 199 72.4
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 6.6e-72 274.6 199 72.4
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 8.6e-72 274.2 184 73.9
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.1e-71 273.9 196 73.0
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.5e-71 273.5 204 68.6
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.9e-71 273.1 198 69.2
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.9e-71 273.1 190 70.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.3e-71 272.3 207 67.6
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 3.3e-71 272.3 197 70.6
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 3.3e-71 272.3 200 71.0
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.3e-71 271.9 198 69.2
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 9.6e-71 270.8 189 70.9
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 9.6e-71 270.8 198 69.7
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 9.6e-71 270.8 197 70.1
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.2e-70 270.4 193 72.5
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.2e-70 270.4 197 71.6
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.6e-70 270.0 189 72.0
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.6e-70 270.0 200 68.5
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 2.1e-70 269.6 197 70.6
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.8e-70 269.2 196 70.4
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.1e-69 267.3 190 70.0
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.1e-69 267.3 199 67.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.4e-69 266.9 197 69.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.4e-69 266.2 197 67.5
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.1e-69 265.8 190 70.0
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 4.0e-69 265.4 206 66.5
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 6.8e-69 264.6 190 69.5
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 8.9e-69 264.2 206 66.5
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 8.9e-69 264.2 195 68.2
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.0e-68 263.1 197 69.0
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 3.4e-68 262.3 197 66.0
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 5.8e-68 261.5 198 70.2
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 7.6e-68 261.2 199 68.3
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.1e-66 257.3 198 67.2
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 4.2e-66 255.4 198 64.6
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.2e-65 253.8 215 63.3
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 2.7e-65 252.7 188 67.6
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 3.5e-65 252.3 210 62.9
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 3.5e-65 252.3 190 65.8
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 4.6e-65 251.9 198 64.6
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 7.8e-65 251.1 198 65.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.0e-64 250.8 210 64.8
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.9e-64 248.8 185 68.1
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 5.1e-64 248.4 195 64.1
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.9e-63 246.5 198 67.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.9e-63 246.5 210 62.4
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 3.3e-63 245.7 194 65.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 7.3e-63 244.6 195 66.2
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.3e-62 243.8 176 69.3
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.4e-61 240.4 191 63.4
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 3.1e-61 239.2 205 62.9
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.3e-61 238.4 164 72.0
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 9.0e-61 237.7 190 63.2
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.2e-60 237.3 257 53.7
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 3.4e-60 235.7 199 62.3
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.8e-60 235.0 199 61.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 5.8e-60 235.0 197 62.9
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 7.6e-60 234.6 197 62.4
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 2.2e-59 233.0 197 59.9
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 4.9e-59 231.9 199 61.3
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 6.4e-59 231.5 192 61.5
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 6.4e-59 231.5 152 74.3
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 6.4e-59 231.5 199 58.8
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 8.4e-59 231.1 190 62.6
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.1e-58 230.7 199 60.8
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 5.4e-58 228.4 197 58.4
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.6e-57 226.9 198 63.1
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 1.0e-56 224.2 197 60.9
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.7e-56 223.4 197 58.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.7e-56 223.4 197 58.4
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 2.3e-56 223.0 300 46.3
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.1e-56 221.9 190 61.6
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 5.1e-56 221.9 197 57.9
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.5e-55 220.3 197 57.4
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 2.5e-55 219.5 215 54.0
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 4.8e-54 215.3 199 57.8
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 2.4e-53 213.0 197 58.9
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 5.3e-53 211.8 194 59.3
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.7e-51 206.8 187 59.4
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.2e-50 202.2 196 57.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.8e-48 196.8 197 54.3
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 2.3e-48 196.4 126 73.0
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.3e-46 190.7 198 52.5
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.8e-46 189.5 199 51.8
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 5.3e-45 185.3 153 64.7
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 6.9e-45 184.9 171 55.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 2.0e-44 183.3 174 54.0
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.6e-44 183.0 166 60.2
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.5e-44 182.2 196 52.0
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 1.1e-42 177.6 169 55.6
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.1e-37 161.0 185 53.0
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.8e-37 160.2 159 54.1
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-35 152.9 100 78.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 4.2e-34 149.1 96 79.2
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 6.1e-33 145.2 131 58.0
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 2.3e-32 143.3 104 76.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 6.7e-32 141.7 142 47.2
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 4.8e-30 135.6 100 69.0
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 2.4e-29 133.3 122 50.8
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.5e-28 130.6 101 60.4
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.0e-28 130.2 101 66.3
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 5.9e-28 128.6 135 57.0
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 5.0e-27 125.6 152 45.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 3.2e-26 122.9 99 66.7
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 5.5e-26 122.1 117 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 7.2e-26 121.7 130 50.0
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 2.2e-22 110.2 90 66.7
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 2.8e-22 109.8 115 52.2
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 2.8e-22 109.8 115 53.0
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 8.2e-22 108.2 154 42.9
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 9.4e-18 94.7 113 44.2
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.8e-16 90.5 69 68.1
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 5.1e-16 89.0 193 31.1
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.3e-14 84.3 65 66.2
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 4.8e-14 82.4 138 37.7
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 2.0e-12 77.0 65 63.1
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 3.8e-11 72.8 57 70.2
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.5e-11 72.0 101 45.5
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 6.5e-11 72.0 45 75.6
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 1.9e-10 70.5 66 60.6
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 5.7e-07 58.9 61 52.5


User provided reference genes

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