Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.2e-161 572.4 325 100.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.5e-125 453.4 325 80.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 4.5e-106 388.7 291 72.9
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 5.9e-106 388.3 283 73.5
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.3e-105 386.3 325 75.7
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.1e-104 384.0 288 72.2
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.2e-103 380.6 281 74.0
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.1e-96 357.5 307 64.5
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.5e-96 357.1 325 68.6
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.3e-96 355.9 320 64.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.3e-96 355.9 320 64.1
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 4.3e-96 355.5 288 69.1
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.6e-96 355.1 287 67.2
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 4.7e-95 352.1 283 68.2
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.3e-94 349.7 301 66.8
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.2e-92 343.2 282 65.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.2e-92 343.2 293 66.6
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.4e-91 340.5 294 65.6
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.9e-91 340.1 286 65.7
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.4e-91 339.7 252 73.4
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.0e-89 332.8 287 63.1
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 8.6e-89 331.3 324 60.5
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 4.3e-88 328.9 331 66.2
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 9.5e-88 327.8 290 64.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 2.1e-87 326.6 294 65.6
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.1e-87 326.6 323 65.6
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.7e-87 325.5 285 63.9
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.1e-86 324.3 285 63.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.1e-86 324.3 285 63.2
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.4e-86 323.9 291 62.2
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.8e-86 323.6 325 66.5
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.2e-86 322.0 319 63.3
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.2e-86 322.0 322 63.7
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 8.9e-86 321.2 236 72.0
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.5e-85 320.5 295 63.4
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 3.4e-85 319.3 294 63.6
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.4e-85 319.3 285 63.2
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.4e-85 318.9 323 66.3
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 4.4e-85 318.9 325 66.2
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.5e-85 318.2 285 62.5
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 7.5e-85 318.2 283 61.5
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 9.8e-85 317.8 302 62.9
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.3e-84 317.4 325 65.8
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 3.7e-84 315.8 325 65.8
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 6.4e-84 315.1 290 62.1
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-83 314.3 290 61.7
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.1e-83 314.3 283 61.5
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 3.2e-83 312.8 284 60.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 4.1e-83 312.4 285 64.6
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 5.4e-83 312.0 288 60.4
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 5.4e-83 312.0 288 60.4
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 9.2e-83 311.2 285 62.1
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.7e-82 309.7 289 59.9
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 2.7e-82 309.7 324 64.8
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.5e-82 309.3 326 64.4
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 3.5e-82 309.3 324 63.6
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 6.0e-82 308.5 285 60.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.0e-82 308.5 282 61.3
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.8e-82 308.1 290 60.7
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.0e-81 307.8 290 63.1
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.7e-81 307.0 325 63.1
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.7e-81 307.0 287 60.6
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.3e-81 306.6 299 57.5
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 3.9e-81 305.8 336 61.6
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 8.6e-81 304.7 287 59.9
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 8.6e-81 304.7 324 63.6
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 1.5e-80 303.9 287 63.1
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.9e-80 303.5 303 59.4
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 5.6e-80 302.0 287 58.9
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 2.1e-79 300.1 291 58.4
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.8e-79 299.7 294 60.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.8e-79 299.7 330 61.8
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 6.2e-79 298.5 288 58.3
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 8.1e-79 298.1 291 59.8
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.4e-78 297.4 325 62.8
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.3e-78 296.6 290 60.7
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 5.2e-78 295.4 303 58.1
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 8.9e-78 294.7 266 59.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 2.6e-77 293.1 284 58.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.6e-77 293.1 273 58.2
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 5.8e-77 292.0 301 61.1
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 7.6e-77 291.6 284 59.9
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 7.6e-77 291.6 287 58.5
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.9e-77 291.2 279 58.8
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 2.2e-76 290.0 283 59.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.9e-76 289.7 301 60.5
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.4e-75 287.3 300 56.7
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.4e-75 287.3 334 51.5
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 4.1e-75 285.8 286 59.4
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.1e-75 285.8 290 57.9
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 9.2e-75 284.6 334 59.9
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.2e-74 284.3 288 58.0
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.6e-74 283.9 297 55.6
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.6e-74 283.9 290 56.6
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.1e-74 283.5 305 55.4
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 5.1e-73 278.9 300 56.0
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 5.1e-73 278.9 289 58.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.5e-72 277.3 289 57.8
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 5.6e-72 275.4 289 58.1
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.6e-71 273.9 282 58.2
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 6.9e-70 268.5 314 52.9
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.5e-69 267.3 299 57.2
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 8.4e-68 261.5 291 58.1
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.4e-67 260.8 291 58.4
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.4e-67 260.0 260 56.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 7.1e-67 258.5 287 57.1
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 7.1e-67 258.5 288 57.3
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 9.3e-67 258.1 288 55.6
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.7e-66 256.5 285 56.5
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.5e-66 256.1 293 53.2
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.6e-66 255.8 168 79.8
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.8e-66 255.0 247 60.3
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 7.8e-66 255.0 286 54.9
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.7e-65 253.8 295 56.9
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.3e-65 253.4 276 55.8
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 8.7e-65 251.5 289 54.7
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 9.6e-64 248.1 290 55.5
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.1e-63 246.9 289 55.0
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 3.1e-62 243.0 329 54.4
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.0e-62 242.7 298 54.4
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.2e-61 241.1 289 53.6
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.6e-61 240.0 240 57.5
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 3.4e-61 239.6 290 53.8
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.3e-60 237.7 224 61.2
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.4e-59 234.2 301 51.8
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.9e-59 233.8 224 60.7
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 6.7e-57 225.3 202 60.9
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.1e-56 224.6 281 51.6
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.6e-55 220.7 290 50.7
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 6.2e-55 218.8 162 71.6
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.4e-52 208.8 167 68.9
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.4e-51 206.8 297 46.1
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.4e-51 206.8 291 45.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 7.1e-51 205.3 125 82.4
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.6e-50 204.1 290 46.2
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.0e-49 199.9 180 62.2
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.1e-47 193.7 288 46.5
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 2.1e-47 193.7 284 48.9
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.4e-46 191.0 176 60.8
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 5.3e-46 189.1 285 44.2
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.2e-45 188.0 166 63.3
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.7e-39 166.4 239 48.5
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.1e-38 163.3 267 43.8
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 5.5e-35 152.5 300 39.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.0e-33 146.7 287 39.4
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 3.3e-32 143.3 286 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 5.7e-32 142.5 297 35.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.2e-31 140.6 134 56.7
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 8.2e-31 138.7 134 56.0
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-29 134.0 280 39.3
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.1e-27 128.3 109 67.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 7.9e-26 122.1 163 66.3
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.3e-25 120.6 75 77.3
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.0e-24 117.5 146 52.7
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 9.7e-24 115.2 154 48.7
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-22 111.7 175 44.0
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.2e-21 108.2 157 47.8
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 2.6e-21 107.1 109 52.3
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 3.4e-21 106.7 236 32.6
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 5.0e-12 76.3 107 47.7
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 6.5e-12 75.9 57 64.9
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 1.6e-10 71.2 142 36.6
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.5e-08 64.7 46 63.0


User provided reference genes

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