Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 3.4e-286 987.6 503 100.0
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.1e-255 886.3 503 87.3
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 4.1e-239 831.2 511 82.4
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 4.7e-235 817.8 512 80.3
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 3.4e-233 811.6 510 79.0
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 2.6e-225 785.4 503 77.5
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 5.4e-223 777.7 513 77.2
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 2.7e-222 775.4 507 75.7
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 6.2e-219 764.2 509 76.8
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 8.0e-219 763.8 505 73.9
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 2.3e-218 762.3 506 75.1
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 3.1e-218 761.9 507 75.3
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 4.0e-218 761.5 514 75.1
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 4.0e-218 761.5 504 74.4
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 4.0e-218 761.5 504 75.4
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 2.6e-217 758.8 505 74.1
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 3.7e-216 755.0 506 73.5
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.4e-216 754.2 521 73.3
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 6.4e-216 754.2 509 75.8
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 6.4e-216 754.2 505 73.7
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 5.4e-215 751.1 518 75.1
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 7.0e-215 750.7 515 75.0
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 6.0e-214 747.7 517 73.1
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.0e-213 745.3 518 71.4
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.5e-212 743.0 507 73.4
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 3.3e-212 741.9 516 75.4
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 5.6e-212 741.1 504 72.0
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 3.6e-211 738.4 517 74.1
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 4.7e-211 738.0 503 72.4
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.2e-211 737.6 506 72.5
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 8.1e-211 737.3 510 72.9
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.3e-210 735.7 504 72.2
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 4.0e-210 734.9 508 74.0
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 5.2e-210 734.6 504 72.0
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 8.9e-210 733.8 504 71.4
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.5e-209 733.0 507 73.0
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 2.0e-209 732.6 508 71.5
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 5.8e-209 731.1 509 70.9
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 9.8e-209 730.3 509 71.1
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 1.3e-208 729.9 519 69.6
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 2.9e-208 728.8 503 71.6
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 6.4e-208 727.6 504 71.6
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 1.4e-207 726.5 507 72.4
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.9e-207 726.1 497 73.0
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.2e-206 723.4 507 72.8
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.1e-206 722.6 505 70.1
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.7e-206 722.2 506 71.3
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.6e-206 721.5 507 71.8
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 4.6e-206 721.5 485 74.0
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 1.3e-205 719.9 564 65.6
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 1.3e-205 719.9 509 70.1
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.7e-205 719.5 516 70.3
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.0e-205 718.8 507 71.4
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 3.9e-205 718.4 519 69.2
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 1.5e-204 716.5 519 69.7
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.4e-202 709.9 529 66.9
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 1.4e-199 699.9 534 67.4
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 9.2e-199 697.2 504 69.8
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 2.5e-196 689.1 509 66.6
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 2.5e-196 689.1 505 69.1
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 3.3e-196 688.7 506 68.6
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 1.2e-195 686.8 592 61.3
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 3.6e-195 685.3 507 68.8
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 6.0e-190 667.9 514 64.2
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 6.0e-190 667.9 514 65.2
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 7.8e-190 667.5 539 61.6
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 2.1e-187 659.4 398 82.4
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 2.8e-187 659.1 524 64.5
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.4e-186 656.8 515 63.3
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.8e-186 656.4 554 64.1
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 5.3e-186 654.8 534 64.4
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 2.9e-184 649.0 509 65.4
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 8.4e-184 647.5 507 65.5
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.3e-181 640.2 516 64.3
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 2.3e-181 639.4 530 63.0
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 3.7e-179 632.1 523 63.1
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 9.0e-178 627.5 515 63.1
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 9.0e-178 627.5 515 63.1
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 9.0e-178 627.5 515 63.1
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.2e-177 627.1 561 59.7
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 5.8e-177 624.8 492 64.6
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 9.9e-177 624.0 515 62.9
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 9.9e-177 624.0 515 62.9
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 9.9e-177 624.0 501 63.9
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.6e-171 606.7 464 67.7
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 4.0e-170 602.1 457 67.4
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.1e-165 585.1 365 78.9
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 3.7e-163 578.9 501 58.7
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 9.3e-159 564.3 403 70.0
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 3.6e-150 535.8 354 74.0
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 2.1e-134 483.4 570 50.5
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.0e-132 476.9 465 57.6
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 8.3e-123 444.9 516 51.4
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 3.3e-119 433.0 544 46.1
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 5.5e-119 432.2 275 77.1
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 5.0e-112 409.1 530 43.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.2e-110 404.4 510 44.5
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.6e-108 396.7 491 49.3
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.5e-103 380.2 255 74.1
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 5.8e-100 369.0 255 74.1
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 7.5e-92 342.0 261 66.3
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 6.6e-88 328.9 556 35.4
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 7.6e-84 315.5 233 70.0
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.9e-83 313.5 222 76.6
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 2.1e-81 307.4 202 76.7
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.2e-76 291.6 457 42.7
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 4.4e-76 289.7 210 70.5
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 7.8e-73 278.9 223 62.3
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 4.2e-66 256.5 259 45.2
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.1e-64 249.6 213 65.3
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 3.2e-58 230.3 248 47.6
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 3.9e-56 223.4 178 64.0
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.1e-50 205.3 477 29.6
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 4.3e-47 193.4 146 65.1
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 6.3e-46 189.5 248 46.4
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.1e-45 187.2 184 54.3
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 3.6e-41 173.7 325 35.4
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 7.7e-36 156.0 258 40.3
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.5e-35 152.9 95 81.1
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 8.2e-30 136.0 111 60.4
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 4.1e-29 133.7 531 25.8
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 7.0e-29 132.9 105 64.8
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 1.2e-28 132.1 82 74.4
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 2.6e-23 114.4 121 51.2
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 2.4e-21 107.8 162 40.7
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 3.8e-19 100.5 128 48.4
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 1.8e-16 91.7 52 73.1
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 4.0e-16 90.5 183 37.2
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 3.8e-11 73.9 83 50.6
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.0e-08 65.9 31 90.3
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 2.8e-06 57.8 139 33.1
Aqoxy7G02283 Aquilegia oxysepala HOM05D005847 ORTHO05D003213 8.3e-06 56.2 30 80.0


User provided reference genes

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