Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 3.0e-62 241.5 107 100.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.0e-14 82.0 41 78.0
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 3.0e-14 82.0 40 77.5
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 5.1e-14 81.3 40 75.0
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 8.7e-14 80.5 41 75.6
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 3.3e-13 78.6 40 70.0
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 4.3e-13 78.2 40 72.5
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 5.6e-13 77.8 40 72.5
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 9.6e-13 77.0 40 72.5
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-12 76.6 38 76.3
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-12 76.6 38 76.3
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.6e-12 76.3 41 75.6
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 1.6e-12 76.3 40 75.0
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.6e-12 76.3 39 74.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.1e-12 75.9 40 70.0
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 2.1e-12 75.9 40 70.0
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 2.1e-12 75.9 40 67.5
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.1e-12 75.9 40 70.0
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 3.7e-12 75.1 41 65.9
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 3.7e-12 75.1 39 71.8
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.8e-12 74.7 39 74.4
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 6.2e-12 74.3 39 69.2
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 6.2e-12 74.3 40 70.0
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 6.2e-12 74.3 39 71.8
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 8.2e-12 73.9 40 70.0
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 8.2e-12 73.9 40 67.5
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 8.2e-12 73.9 39 71.8
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 1.1e-11 73.6 39 69.2
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.1e-11 73.6 40 65.0
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.4e-11 73.2 39 69.2
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.8e-11 72.8 40 65.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.4e-11 72.4 39 66.7
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 2.4e-11 72.4 40 67.5
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.4e-11 72.4 38 73.7
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 2.4e-11 72.4 40 70.0
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 3.1e-11 72.0 39 66.7
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 3.1e-11 72.0 40 65.0
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 4.0e-11 71.6 40 65.0
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 4.0e-11 71.6 40 65.0
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.0e-11 71.6 40 65.0
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.0e-11 71.6 40 65.0
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.0e-11 71.6 40 65.0
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 4.0e-11 71.6 39 64.1
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 4.0e-11 71.6 41 63.4
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 5.3e-11 71.2 40 65.0
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.3e-11 71.2 40 67.5
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 6.9e-11 70.9 40 67.5
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.9e-11 70.9 40 65.0
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 6.9e-11 70.9 39 69.2
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 9.0e-11 70.5 39 64.1
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 9.0e-11 70.5 38 68.4
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 9.0e-11 70.5 38 68.4
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.2e-10 70.1 39 66.7
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.5e-10 69.7 39 61.5
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.0e-10 69.3 39 64.1
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.0e-10 69.3 39 64.1
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 2.0e-10 69.3 39 64.1
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.6e-10 68.9 39 61.5
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.6e-10 68.9 39 61.5
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 2.6e-10 68.9 39 64.1
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 3.4e-10 68.6 36 72.2
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 3.4e-10 68.6 37 70.3
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.5e-10 68.2 39 61.5
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 4.5e-10 68.2 49 57.1
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 5.8e-10 67.8 38 63.2
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 5.8e-10 67.8 38 68.4
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 5.8e-10 67.8 42 61.9
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-10 67.8 40 62.5
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-10 67.8 40 62.5
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-10 67.8 40 62.5
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-10 67.8 40 62.5
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-10 67.8 40 62.5
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.6e-10 67.4 39 61.5
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 7.6e-10 67.4 35 71.4
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 7.6e-10 67.4 40 62.5
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.0e-09 67.0 37 64.9
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.0e-09 67.0 34 70.6
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.0e-09 67.0 35 74.3
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.0e-09 67.0 39 66.7
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.0e-09 67.0 39 66.7
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.3e-09 66.6 35 68.6
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.3e-09 66.6 37 67.6
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.7e-09 66.2 35 68.6
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.7e-09 66.2 35 68.6
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.7e-09 66.2 39 61.5
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.7e-09 66.2 40 67.5
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 2.2e-09 65.9 40 60.0
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.2e-09 65.9 40 60.0
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.2e-09 65.9 38 63.2
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 2.2e-09 65.9 40 60.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 2.2e-09 65.9 37 64.9
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.9e-09 65.5 40 55.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 2.9e-09 65.5 41 56.1
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.9e-09 65.5 41 56.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-09 65.5 40 60.0
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 3.8e-09 65.1 40 60.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 3.8e-09 65.1 39 61.5
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.8e-09 65.1 39 61.5
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 3.8e-09 65.1 39 61.5
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.8e-09 65.1 39 61.5
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 3.8e-09 65.1 39 61.5
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 3.8e-09 65.1 34 70.6
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 3.8e-09 65.1 34 70.6
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 3.8e-09 65.1 40 55.0
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 4.9e-09 64.7 40 57.5
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 4.9e-09 64.7 40 55.0
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.5e-09 64.3 35 68.6
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.5e-09 64.3 35 68.6
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 6.5e-09 64.3 40 55.0
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 6.5e-09 64.3 35 65.7
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 6.5e-09 64.3 39 61.5
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 8.4e-09 63.9 36 66.7
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 8.4e-09 63.9 36 66.7
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.4e-09 63.9 36 66.7
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.1e-08 63.5 39 61.5
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.1e-08 63.5 40 50.0
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 1.1e-08 63.5 40 57.5
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-08 63.2 35 65.7
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.4e-08 63.2 40 57.5
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.9e-08 62.8 40 52.5
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.9e-08 62.8 40 52.5
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.9e-08 62.8 33 69.7
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.5e-08 62.4 31 74.2
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.5e-08 62.4 40 62.5
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 2.5e-08 62.4 39 59.0
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 3.2e-08 62.0 40 55.0
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 3.2e-08 62.0 33 66.7
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 4.2e-08 61.6 38 57.9
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.2e-08 61.6 35 62.9
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 4.2e-08 61.6 31 71.0
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 5.5e-08 61.2 40 57.5
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 5.5e-08 61.2 35 62.9
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 7.1e-08 60.8 38 63.2
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.1e-08 60.8 31 71.0
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.3e-08 60.5 35 62.9
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 9.3e-08 60.5 28 75.0
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 9.3e-08 60.5 28 75.0
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.2e-07 60.1 35 62.9
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-07 60.1 35 62.9
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.1e-07 59.3 39 56.4
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 3.5e-07 58.5 38 55.3
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 4.6e-07 58.2 31 67.7
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 7.9e-07 57.4 40 50.0
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 7.9e-07 57.4 37 59.5
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.0e-06 57.0 34 61.8
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.0e-06 57.0 40 45.0
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-06 57.0 35 62.9
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.0e-06 57.0 37 59.5
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.3e-06 56.6 39 48.7
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.3e-06 55.8 28 71.4
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 3.9e-06 55.1 37 54.1


User provided reference genes

Program Settings