Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2237 Trochodendron aralioides HOM05D002290 ORTHO05D002532 3.1e-66 255.0 129 100.0
TAR629G2459 Trochodendron aralioides HOM05D002290 ORTHO05D002532 3.1e-58 228.4 128 89.1
TAR375G0429 Trochodendron aralioides HOM05D002290 ORTHO05D002532 1.2e-36 156.8 128 64.1
Cfa006407 Carpinus fangiana HOM05D002290 ORTHO05D002532 8.8e-29 130.6 128 53.9
Ciclev10020194m.g Citrus clementina HOM05D002290 ORTHO05D002532 3.4e-28 128.6 128 50.8
Cfa006406 Carpinus fangiana HOM05D002290 ORTHO05D002532 1.3e-27 126.7 128 53.1
Atru.chr9.1999 Acer truncatum HOM05D002290 ORTHO05D002532 2.8e-27 125.6 128 49.2
COL.COLO4_10696 Corchorus olitorius HOM05D002290 ORTHO05D002532 8.3e-27 124.0 128 49.2
Haze_04372 Corylus avellana HOM05D002290 ORTHO05D002532 1.4e-26 123.2 128 50.8
Nn1g04476 Nelumbo nucifera HOM05D002290 ORTHO05D002532 2.4e-26 122.5 129 55.8
Duzib068G0387 Durio zibethinus HOM05D002290 ORTHO05D002532 7.0e-26 120.9 128 48.4
Duzib205G0860 Durio zibethinus HOM05D002290 ORTHO05D002532 4.5e-25 118.2 128 47.7
MBI06_g08461_MAGBIO Magnolia biondii HOM05D002290 ORTHO05D002532 1.0e-24 117.1 122 54.1
PSO170G3987 Papaver somniferum HOM05D002290 ORTHO05D002532 5.6e-23 111.3 129 50.4
Manes.12G013800 Manihot esculenta HOM05D002290 ORTHO05D002532 7.3e-23 110.9 128 45.3
QL02p030669 Quercus lobata HOM05D002290 ORTHO05D002532 7.3e-23 110.9 129 48.1
PSO063G5717 Papaver somniferum HOM05D002290 ORTHO05D002532 2.1e-22 109.4 129 50.4
Dinv37532 Davidia involucrata HOM05D002290 ORTHO05D002532 3.6e-22 108.6 129 48.8
Prupe.2G187000 Prunus persica HOM05D002290 ORTHO05D002532 4.7e-22 108.2 130 49.2
TWI81G0556 Tripterygium wilfordii HOM05D002290 ORTHO05D002532 6.1e-22 107.8 128 48.4
Dinv38832 Davidia involucrata HOM05D002290 ORTHO05D002532 1.0e-21 107.1 129 46.5
Gohir.A12G236300 Gossypium hirsutum HOM05D002290 ORTHO05D002532 1.4e-21 106.7 130 42.3
RcHm_v2.0_Chr1g0359321 Rosa chinensis HOM05D002290 ORTHO05D002532 1.8e-21 106.3 129 46.5
Gohir.D12G237500 Gossypium hirsutum HOM05D002290 ORTHO05D002532 4.0e-21 105.1 130 43.1
Gohir.D03G083100 Gossypium hirsutum HOM05D002290 ORTHO05D002532 5.2e-21 104.8 138 42.8
Gorai.007G026600 Gossypium raimondii HOM05D002290 ORTHO05D002532 6.8e-21 104.4 128 42.2
Sabra01G0068200 Salix brachista HOM05D002290 ORTHO05D002532 1.2e-20 103.6 127 46.5
Gorai.008G254200 Gossypium raimondii HOM05D002290 ORTHO05D002532 2.0e-20 102.8 130 42.3
Potri.001G091800 Populus trichocarpa HOM05D002290 ORTHO05D002532 2.0e-20 102.8 130 46.2
Gohir.A02G101200 Gossypium hirsutum HOM05D002290 ORTHO05D002532 4.4e-20 101.7 138 41.3
Lj8A208G55 Lonicera japonica HOM05D002290 ORTHO05D002532 7.5e-20 100.9 130 46.9
MD07G1148500 Malus domestica HOM05D002290 ORTHO05D002532 9.8e-20 100.5 129 46.5
PGR042G3133 Punica granatum HOM05D002290 ORTHO05D002532 9.8e-20 100.5 129 41.9
Gohir.D11G024800 Gossypium hirsutum HOM05D002290 ORTHO05D002532 1.3e-19 100.1 128 41.4
Potri.003G139800 Populus trichocarpa HOM05D002290 ORTHO05D002532 2.2e-19 99.4 132 43.2
CiPaw.11G121700 Carya illinoinensis HOM05D002290 ORTHO05D002532 3.7e-19 98.6 129 45.0
Gorai.003G080300 Gossypium raimondii HOM05D002290 ORTHO05D002532 3.7e-19 98.6 138 42.0
Sc23g0002130 Simmondsia chinensis HOM05D002290 ORTHO05D002532 4.9e-19 98.2 132 41.7
arahy.Tifrunner.gnm1.ann1.EY65RF Arachis hypogaea HOM05D002290 ORTHO05D002532 1.4e-18 96.7 128 43.0
Aqoxy7G00111 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 1.8e-18 96.3 128 43.0
Actinidia27317 Actinidia chinensis HOM05D002290 ORTHO05D002532 5.4e-18 94.7 129 45.7
Eucgr.E00860 Eucalyptus grandis HOM05D002290 ORTHO05D002532 5.4e-18 94.7 133 43.6
PSO135G0671 Papaver somniferum HOM05D002290 ORTHO05D002532 1.2e-17 93.6 146 39.0
Hma1.2p1_0359F.1_g135260 Hydrangea macrophylla HOM05D002290 ORTHO05D002532 1.6e-17 93.2 123 45.5
Lalb_Chr20g0108181 Lupinus albus HOM05D002290 ORTHO05D002532 2.7e-17 92.4 128 43.0
Aqoxy5G04225 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 3.5e-17 92.0 128 46.9
Lj2A168T57 Lonicera japonica HOM05D002290 ORTHO05D002532 3.5e-17 92.0 130 46.9
Thecc.03G297400 Theobroma cacao HOM05D002290 ORTHO05D002532 3.5e-17 92.0 100 43.0
arahy.Tifrunner.gnm1.ann1.X1WEHF Arachis hypogaea HOM05D002290 ORTHO05D002532 1.0e-16 90.5 129 41.1
Lalb_Chr25g0283581 Lupinus albus HOM05D002290 ORTHO05D002532 1.3e-16 90.1 128 41.4
Ca_18517_v3 Cicer arietinum L. HOM05D002290 ORTHO05D002532 3.9e-16 88.6 128 42.2
CSS0030360 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 5.0e-16 88.2 129 45.0
PSO384G4601 Papaver somniferum HOM05D002290 ORTHO05D002532 6.6e-16 87.8 143 40.6
ClCG07G015030 Citrullus lanatus HOM05D002290 ORTHO05D002532 1.5e-15 86.7 129 39.5
Sed0023168 Sechium edule HOM05D002290 ORTHO05D002532 2.5e-15 85.9 129 40.3
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 3.3e-15 85.5 132 43.9
Actinidia04202 Actinidia chinensis HOM05D002290 ORTHO05D002532 4.3e-15 85.1 129 41.1
Glyma.07G235200 Glycine max HOM05D002290 ORTHO05D002532 7.3e-15 84.3 127 39.4
Prupe.5G118500 Prunus persica HOM05D002290 ORTHO05D002532 9.5e-15 84.0 130 39.2
Actinidia22155 Actinidia chinensis HOM05D002290 ORTHO05D002532 1.2e-14 83.6 129 42.6
Nitab4.5_0007521g0030 Nicotiana tabacum HOM05D002290 ORTHO05D002532 1.6e-14 83.2 132 43.2
Phvul.002G225801 Phaseolus vulgaris HOM05D002290 ORTHO05D002532 1.6e-14 83.2 130 37.7
Hund14222 Selenicereus undatus HOM05D002290 ORTHO05D002532 1.6e-14 83.2 129 41.1
CSS0016367 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 2.1e-14 82.8 129 43.4
CSS0049945 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 2.1e-14 82.8 129 43.4
Psat4g003840 Pisum sativum HOM05D002290 ORTHO05D002532 2.1e-14 82.8 130 42.3
Solyc08g082300.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 2.8e-14 82.4 134 41.0
FAN06G0145 Fragaria x ananassa HOM05D002290 ORTHO05D002532 3.6e-14 82.0 118 41.5
FAN06G4253 Fragaria x ananassa HOM05D002290 ORTHO05D002532 3.6e-14 82.0 118 41.5
MELO3C016291.2 Cucumis melo HOM05D002290 ORTHO05D002532 4.7e-14 81.6 129 38.8
FvH4_7g16310 Fragaria vesca HOM05D002290 ORTHO05D002532 4.7e-14 81.6 118 41.5
Sopen08g030560 Solanum pennellii HOM05D002290 ORTHO05D002532 4.7e-14 81.6 134 40.3
Rhsim07G0082400 Rhododendron simsii HOM05D002290 ORTHO05D002532 6.2e-14 81.3 130 42.3
CAN.G532.120 Capsicum annuum HOM05D002290 ORTHO05D002532 8.0e-14 80.9 134 42.5
AUR62004481 Chenopodium quinoa HOM05D002290 ORTHO05D002532 8.0e-14 80.9 134 37.3
Hund27202 Selenicereus undatus HOM05D002290 ORTHO05D002532 1.1e-13 80.5 132 37.1
Lalb_Chr25g0283571 Lupinus albus HOM05D002290 ORTHO05D002532 2.3e-13 79.3 128 40.6
CsaV3_4G006570 Cucumis sativus L. HOM05D002290 ORTHO05D002532 4.0e-13 78.6 129 38.0
Peaxi162Scf00074g00928 Petunia axillaris HOM05D002290 ORTHO05D002532 4.0e-13 78.6 135 41.5
Psat7g112000 Pisum sativum HOM05D002290 ORTHO05D002532 4.0e-13 78.6 128 35.9
GSVIVG01019529001 Vitis vinifera HOM05D002290 ORTHO05D002532 5.2e-13 78.2 124 39.5
FAN01G2053 Fragaria x ananassa HOM05D002290 ORTHO05D002532 6.8e-13 77.8 118 40.7
CANSAT21G2386 Cannabis sativa HOM05D002290 ORTHO05D002532 8.9e-13 77.4 131 37.4
Atru.chr12.1156 Acer truncatum HOM05D002290 ORTHO05D002532 2.6e-12 75.9 97 42.3
FAN10G3207 Fragaria x ananassa HOM05D002290 ORTHO05D002532 2.6e-12 75.9 118 41.5
Lj2g0019811 Lotus japonicus HOM05D002290 ORTHO05D002532 2.6e-12 75.9 128 36.7
Sc01g0010300 Simmondsia chinensis HOM05D002290 ORTHO05D002532 2.6e-12 75.9 131 38.9
FAN10G0122 Fragaria x ananassa HOM05D002290 ORTHO05D002532 3.4e-12 75.5 118 40.7
vmacro13898 Vaccinium macrocarpon HOM05D002290 ORTHO05D002532 3.4e-12 75.5 127 40.2
EL10Ac5g12913 Beta vulgaris HOM05D002290 ORTHO05D002532 4.4e-12 75.1 133 39.1
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 1.3e-11 73.6 126 37.3
Sed0014582 Sechium edule HOM05D002290 ORTHO05D002532 1.3e-11 73.6 129 37.2
AUR62023472 Chenopodium quinoa HOM05D002290 ORTHO05D002532 2.2e-11 72.8 135 35.6
AUR62023535 Chenopodium quinoa HOM05D002290 ORTHO05D002532 2.2e-11 72.8 135 35.6
Glyma.13G182900 Glycine max HOM05D002290 ORTHO05D002532 3.7e-11 72.0 130 36.9
Peaxi162Scf00102g01756 Petunia axillaris HOM05D002290 ORTHO05D002532 3.7e-11 72.0 132 40.9
Aa31LG11G1480 Aethionema arabicum HOM05D002290 ORTHO05D002532 6.4e-11 71.2 128 37.5
Glyma.07G193700 Glycine max HOM05D002290 ORTHO05D002532 8.3e-11 70.9 130 38.5
Solyc08g008320.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 8.3e-11 70.9 133 43.6
VMungo0251G0742 Vigna mungo HOM05D002290 ORTHO05D002532 8.3e-11 70.9 130 33.8
Thhalv10001727m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 1.4e-10 70.1 134 38.1
RcHm_v2.0_Chr7g0194921 Rosa chinensis HOM05D002290 ORTHO05D002532 1.9e-10 69.7 131 36.6
CAN.G792.39 Capsicum annuum HOM05D002290 ORTHO05D002532 3.2e-10 68.9 131 40.5
arahy.Tifrunner.gnm1.ann1.R32419 Arachis hypogaea HOM05D002290 ORTHO05D002532 4.1e-10 68.6 130 38.5
MD06G1106300 Malus domestica HOM05D002290 ORTHO05D002532 7.0e-10 67.8 131 34.4
Ah.12g052540 Amaranthus hybridus HOM05D002290 ORTHO05D002532 9.2e-10 67.4 129 35.7
arahy.Tifrunner.gnm1.ann1.H71861 Arachis hypogaea HOM05D002290 ORTHO05D002532 1.2e-09 67.0 130 37.7
Sopen08g004180 Solanum pennellii HOM05D002290 ORTHO05D002532 1.6e-09 66.6 133 42.1
PGSC0003DMG400005839 Solanum tuberosum HOM05D002290 ORTHO05D002532 2.7e-09 65.9 133 42.9
Ah.13g065850 Amaranthus hybridus HOM05D002290 ORTHO05D002532 4.6e-09 65.1 133 36.1
Nitab4.5_0002944g0010 Nicotiana tabacum HOM05D002290 ORTHO05D002532 4.6e-09 65.1 134 41.0
PGR042G2044 Punica granatum HOM05D002290 ORTHO05D002532 1.0e-08 63.9 132 39.4
arahy.Tifrunner.gnm1.ann1.SMD748 Arachis hypogaea HOM05D002290 ORTHO05D002532 1.3e-08 63.5 126 37.3
Oeu009958.1 Olea europaea HOM05D002290 ORTHO05D002532 1.3e-08 63.5 128 42.2
CDE02G2069 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.3e-08 62.8 120 36.7
Psat7g111880 Pisum sativum HOM05D002290 ORTHO05D002532 2.3e-08 62.8 128 35.2
DCAR_005044 Daucus carota HOM05D002290 ORTHO05D002532 3.0e-08 62.4 125 32.8
AT5G62050 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 3.9e-08 62.0 126 34.1
THA.LOC104817358 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 3.9e-08 62.0 129 34.1
THA.LOC104823804 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 3.9e-08 62.0 128 35.9
Aa31LG5G18540 Aethionema arabicum HOM05D002290 ORTHO05D002532 5.0e-08 61.6 128 32.8
AL8G38820 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 5.0e-08 61.6 126 32.5
Cpa.g.sc1.159 Carica papaya HOM05D002290 ORTHO05D002532 5.0e-08 61.6 130 36.2
TPR.G12131 Trifolium pratense HOM05D002290 ORTHO05D002532 1.1e-07 60.5 130 36.2
MSTRG.13884 Avicennia marina HOM05D002290 ORTHO05D002532 1.5e-07 60.1 133 39.1
Oeu034335.1 Olea europaea HOM05D002290 ORTHO05D002532 1.5e-07 60.1 135 39.3
Aa31sc1839G10 Aethionema arabicum HOM05D002290 ORTHO05D002532 2.5e-07 59.3 132 37.1
Carub.0008s2273 Capsella rubella HOM05D002290 ORTHO05D002532 2.5e-07 59.3 126 33.3
Medtr4g107330 Medicago truncatula HOM05D002290 ORTHO05D002532 2.5e-07 59.3 131 35.9
CARHR275840 Cardamine hirsuta HOM05D002290 ORTHO05D002532 3.3e-07 58.9 126 33.3
Sp4g28470 Schrenkiella parvula HOM05D002290 ORTHO05D002532 3.3e-07 58.9 135 36.3
C03p30610 Brassica napus HOM05D002290 ORTHO05D002532 4.3e-07 58.5 135 38.5
BolC3t15411H Brassica oleracea HOM05D002290 ORTHO05D002532 4.3e-07 58.5 135 38.5
TPR.G38405 Trifolium pratense HOM05D002290 ORTHO05D002532 4.3e-07 58.5 140 32.9
AL4G45780 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 5.6e-07 58.2 132 35.6
BcaC01g05067 Brassica carinata HOM05D002290 ORTHO05D002532 7.3e-07 57.8 135 37.8
Aa31LG1G27780 Aethionema arabicum HOM05D002290 ORTHO05D002532 9.5e-07 57.4 132 36.4
A03p25650 Brassica napus HOM05D002290 ORTHO05D002532 1.2e-06 57.0 135 37.8
BraA03t11780Z Brassica rapa HOM05D002290 ORTHO05D002532 1.2e-06 57.0 137 37.2
AT2G46470 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 1.6e-06 56.6 134 33.6
Carub.0004s2915 Capsella rubella HOM05D002290 ORTHO05D002532 1.6e-06 56.6 134 34.3
BcaB01g03216 Brassica carinata HOM05D002290 ORTHO05D002532 2.8e-06 55.8 136 37.5
CDE09G1109 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.8e-06 55.8 123 34.1
THA.LOC104827625 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 2.8e-06 55.8 131 36.6
Aa31LG1G27790 Aethionema arabicum HOM05D002290 ORTHO05D002532 8.1e-06 54.3 118 38.1


User provided reference genes

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