Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 3.7e-169 598.2 320 100.0
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 8.4e-121 437.6 301 77.7
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 6.7e-118 427.9 279 81.0
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 4.3e-117 425.2 304 76.0
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 5.6e-117 424.9 276 80.8
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.1e-115 420.6 329 71.7
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.4e-115 420.2 307 75.6
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 2.4e-115 419.5 323 71.2
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 6.9e-115 417.9 321 72.0
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 9.0e-115 417.5 254 83.1
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.2e-114 417.2 290 77.2
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.5e-114 416.8 254 84.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 2.6e-114 416.0 306 75.2
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 2.6e-114 416.0 267 79.8
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 3.4e-114 415.6 316 72.2
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 4.5e-114 415.2 320 72.5
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 7.6e-114 414.5 305 75.1
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 7.6e-114 414.5 304 73.7
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 9.9e-114 414.1 311 71.4
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.3e-113 413.7 311 73.3
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.2e-113 412.9 319 72.4
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.2e-113 412.9 300 73.0
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 2.2e-113 412.9 315 70.8
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 2.9e-113 412.5 318 70.1
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 3.8e-113 412.1 256 83.6
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.8e-113 412.1 256 81.6
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 6.4e-113 411.4 323 70.9
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.1e-112 410.6 313 70.9
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.1e-112 410.6 302 74.5
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.4e-112 410.2 259 80.7
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.4e-112 409.5 264 81.8
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 3.2e-112 409.1 281 76.5
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.2e-112 409.1 277 79.1
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 3.2e-112 409.1 324 69.4
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 4.2e-112 408.7 328 69.2
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 4.2e-112 408.7 277 77.6
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.6e-111 406.8 295 73.6
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 1.6e-111 406.8 260 80.8
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 2.1e-111 406.4 320 69.1
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 2.7e-111 406.0 302 71.9
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 3.5e-111 405.6 318 70.8
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 7.9e-111 404.4 257 82.1
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.3e-110 402.9 320 69.1
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.3e-110 402.9 320 69.1
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 3.0e-110 402.5 307 72.3
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 5.1e-110 401.7 305 70.5
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.7e-110 401.4 321 68.5
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.9e-109 399.8 320 68.4
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.5e-109 399.4 314 71.0
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 3.3e-109 399.1 293 72.7
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 3.3e-109 399.1 294 71.8
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 9.6e-109 397.5 330 67.0
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.6e-108 396.7 277 77.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 1.6e-108 396.7 324 68.5
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.6e-108 396.7 266 76.3
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 1.6e-108 396.7 323 68.1
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.1e-108 396.4 315 69.8
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.8e-108 396.0 261 77.4
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.8e-108 396.0 379 61.7
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 3.7e-108 395.6 270 75.6
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 3.7e-108 395.6 317 67.5
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 3.7e-108 395.6 331 67.1
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 4.8e-108 395.2 261 78.2
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 6.2e-108 394.8 261 76.6
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 8.1e-108 394.4 261 77.0
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 1.1e-107 394.0 261 76.2
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.4e-107 393.7 261 76.6
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 2.4e-107 392.9 337 66.5
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 4.0e-107 392.1 317 66.9
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 9.0e-107 391.0 329 64.4
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 9.0e-107 391.0 263 75.7
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 9.0e-107 391.0 327 65.4
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.2e-106 390.6 266 77.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.5e-106 390.2 317 66.6
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 1.5e-106 390.2 261 75.5
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 2.6e-106 389.4 257 77.4
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.4e-106 389.0 284 71.5
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 5.8e-106 388.3 316 66.8
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 7.6e-106 387.9 308 70.1
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.7e-105 386.7 316 66.8
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 2.2e-105 386.3 321 66.4
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 2.9e-105 386.0 257 78.2
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 4.9e-105 385.2 382 60.5
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.1e-104 384.0 257 76.7
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.1e-104 384.0 279 72.8
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.4e-104 383.6 327 64.8
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 5.5e-104 381.7 385 60.0
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.3e-102 376.3 296 71.6
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 3.0e-102 375.9 257 75.9
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 3.0e-102 375.9 280 72.1
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 3.1e-99 365.9 259 72.2
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 6.9e-99 364.8 296 65.2
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 8.5e-97 357.8 306 62.4
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.5e-96 356.3 289 67.5
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 5.5e-96 355.1 251 73.7
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 6.1e-95 351.7 240 75.8
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 6.1e-95 351.7 240 75.8
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.3e-94 349.7 287 66.2
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.6e-92 343.6 256 67.6
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.1e-91 339.0 257 74.3
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 5.5e-88 328.6 470 45.3
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.6e-87 327.0 259 72.2
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 2.8e-84 316.2 201 81.1
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.4e-83 313.9 255 68.2
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.2e-82 310.8 252 70.6
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.2e-81 306.6 197 81.2
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 2.9e-81 306.2 251 59.8
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.6e-79 299.3 266 59.0
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.4e-78 297.4 179 86.0
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 8.8e-78 294.7 255 63.5
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 3.7e-76 289.3 252 57.9
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 7.0e-75 285.0 242 59.9
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 5.9e-74 282.0 304 53.9
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.2e-71 274.2 247 53.4
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 5.7e-69 265.4 241 56.4
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.4e-67 260.0 220 69.5
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 3.5e-58 229.6 205 63.9
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 8.6e-57 224.9 237 52.7
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.1e-55 220.3 182 65.4
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 5.2e-54 215.7 247 49.4
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 8.8e-54 214.9 205 58.0
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.4e-53 213.0 310 44.2
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 2.3e-49 200.3 210 57.1
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 1.2e-42 177.9 278 41.7
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 8.3e-28 128.6 87 77.0
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 1.3e-20 104.8 135 50.4
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-19 101.7 155 46.5
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 9.2e-19 98.6 71 70.4
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 3.9e-17 93.2 63 65.1
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 1.2e-15 88.2 78 67.9
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 5.2e-14 82.8 66 68.2
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 2.3e-09 67.4 48 60.4
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 8.7e-09 65.5 43 67.4
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 1.9e-08 64.3 71 46.5
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 9.6e-08 62.0 42 71.4
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 2.1e-07 60.8 87 46.0


User provided reference genes

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