Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 8.1e-222 773.5 402 100.0
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 3.4e-119 432.6 289 72.7
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 1.7e-118 430.3 326 66.9
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 1.7e-118 430.3 326 66.9
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 1.4e-117 427.2 330 67.6
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 7.1e-117 424.9 342 66.1
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 6.0e-116 421.8 332 63.9
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 6.0e-116 421.8 352 64.2
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 1.3e-115 420.6 276 76.8
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 3.9e-115 419.1 337 65.3
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.1e-114 417.5 325 65.8
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 1.5e-114 417.2 298 69.5
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 1.2e-113 414.1 297 69.0
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 1.6e-113 413.7 337 63.8
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 6.9e-112 408.3 298 69.1
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 8.9e-112 407.9 342 63.2
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 5.8e-111 405.2 297 68.4
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 1.3e-110 404.1 340 61.5
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.1e-109 401.0 306 66.7
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 1.9e-109 400.2 346 60.4
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 5.4e-109 398.7 318 65.1
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 4.6e-108 395.6 296 67.6
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 1.7e-107 393.7 302 65.9
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 2.3e-107 393.3 298 66.8
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 3.9e-107 392.5 291 66.3
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 6.6e-107 391.7 320 64.1
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 6.6e-107 391.7 279 69.9
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 8.7e-107 391.3 292 65.4
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 8.7e-107 391.3 291 66.3
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 1.1e-106 391.0 319 63.3
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 3.3e-106 389.4 307 63.8
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 2.1e-105 386.7 299 65.6
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 3.6e-105 386.0 291 65.3
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 3.6e-105 386.0 291 66.7
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 4.5e-103 379.0 291 66.7
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 2.2e-102 376.7 299 62.9
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 2.4e-101 373.2 292 62.0
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 3.2e-101 372.9 297 65.7
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 5.4e-101 372.1 327 57.5
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 1.2e-100 370.9 342 57.9
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 1.0e-99 367.9 289 63.0
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 1.0e-99 367.9 291 62.2
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 1.0e-99 367.9 283 66.1
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 1.0e-99 367.9 319 60.2
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 1.3e-99 367.5 278 66.2
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 3.0e-99 366.3 327 57.5
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 6.7e-99 365.2 283 64.7
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 1.1e-98 364.4 295 62.7
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 4.3e-98 362.5 279 66.3
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 9.6e-98 361.3 299 62.5
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 2.1e-97 360.1 294 62.9
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 2.8e-97 359.8 300 62.0
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 6.2e-97 358.6 300 60.3
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 6.2e-97 358.6 328 57.0
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 1.8e-96 357.1 289 62.6
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 4.0e-96 355.9 327 58.1
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 9.0e-96 354.8 309 57.3
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 1.2e-95 354.4 294 60.5
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 1.2e-95 354.4 294 60.5
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 1.2e-95 354.4 294 60.2
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 1.5e-95 354.0 297 62.0
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 2.0e-95 353.6 316 59.2
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 4.5e-95 352.4 305 60.3
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.8e-94 349.4 297 61.6
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 7.1e-93 345.1 329 55.3
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 9.3e-93 344.7 293 59.0
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 9.3e-93 344.7 293 58.7
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 1.6e-92 344.0 275 62.5
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 6.0e-92 342.0 329 56.5
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 6.0e-92 342.0 292 59.2
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 7.9e-92 341.7 293 60.1
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.0e-91 341.3 352 50.9
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.9e-90 337.0 358 50.3
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 5.6e-90 335.5 323 55.7
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 7.4e-90 335.1 316 56.6
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 9.6e-90 334.7 267 62.9
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 1.3e-89 334.3 327 55.0
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 8.1e-89 331.6 316 56.0
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 1.8e-88 330.5 298 54.4
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 1.8e-88 330.5 328 54.9
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 2.4e-88 330.1 324 56.2
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 5.3e-88 328.9 301 57.8
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 3.4e-87 326.2 324 55.6
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 8.4e-86 321.6 287 57.1
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 2.5e-85 320.1 330 53.3
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 6.0e-84 315.5 330 52.4
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 3.9e-83 312.8 213 72.3
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 3.3e-82 309.7 338 51.8
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 7.4e-82 308.5 303 54.1
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 1.3e-81 307.8 343 50.7
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 1.6e-81 307.4 316 52.5
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 2.1e-81 307.0 345 50.4
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 8.2e-81 305.1 290 56.2
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 2.4e-80 303.5 299 53.8
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 5.5e-77 292.4 227 63.4
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 1.6e-73 280.8 230 59.6
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 8.2e-73 278.5 307 48.2
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 2.4e-72 276.9 230 59.1
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 7.2e-69 265.4 308 46.1
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 5.5e-61 239.2 179 70.9
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 1.0e-59 235.0 309 42.7
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.6e-55 221.1 170 64.1
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 4.7e-52 209.5 168 57.7
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 6.1e-52 209.1 152 68.4
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 5.3e-48 196.1 231 48.5
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 1.2e-44 184.9 198 48.5
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 2.0e-42 177.6 183 54.1
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 3.7e-41 173.3 317 36.0
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 3.8e-38 163.3 189 46.6
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 5.0e-38 162.9 297 35.7
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 6.1e-36 156.0 135 60.7
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.7e-33 146.7 244 36.1
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 5.4e-32 142.9 243 36.2
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.7e-31 140.6 237 35.9
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 4.5e-31 139.8 214 35.0
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 1.9e-29 134.4 244 34.0
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 7.3e-29 132.5 236 34.7
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 1.0e-27 128.6 207 34.8
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 5.7e-26 122.9 103 58.3
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 4.9e-25 119.8 237 31.6
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 4.1e-24 116.7 124 46.0
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 2.7e-23 114.0 128 45.3
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 3.0e-22 110.5 232 31.5
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.3e-19 100.9 207 30.4
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 7.5e-18 95.9 158 37.3
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 1.2e-12 78.6 63 61.9
Actinidia09700 Actinidia chinensis HOM05D006259 ORTHO05D053169 2.1e-07 61.2 43 69.8
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 2.7e-07 60.8 52 55.8
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 3.0e-06 57.4 48 54.2


User provided reference genes

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