Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.4e-82 309.7 167 100.0
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.0e-40 170.6 186 58.1
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.9e-39 166.4 170 60.0
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 4.2e-39 165.2 181 57.5
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.6e-38 163.3 182 58.2
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.6e-38 163.3 176 58.0
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 6.1e-38 161.4 175 56.0
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 6.1e-38 161.4 175 57.7
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.0e-37 160.6 182 56.0
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 2.3e-37 159.5 179 56.4
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 6.7e-37 157.9 189 55.6
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 8.8e-37 157.5 176 56.8
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.9e-36 156.4 170 56.5
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.9e-36 156.4 167 62.3
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.3e-35 153.7 176 54.5
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.7e-35 152.1 191 52.4
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 3.7e-35 152.1 191 52.4
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.8e-35 151.8 189 55.6
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 5.3e-34 148.3 175 54.3
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 6.9e-34 147.9 168 53.0
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.0e-33 146.4 194 52.6
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 5.0e-32 141.7 195 50.3
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.4e-31 140.2 171 54.4
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 3.2e-31 139.0 183 51.9
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.6e-30 136.7 169 48.5
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 3.6e-30 135.6 189 47.6
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.8e-29 133.3 190 51.6
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.1e-29 131.7 175 48.0
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.3e-28 129.0 175 48.0
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 4.4e-28 128.6 178 50.6
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 4.4e-28 128.6 175 48.6
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.3e-27 127.1 174 48.3
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.7e-27 126.7 177 50.3
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.1e-26 124.0 170 50.6
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 1.8e-26 123.2 171 49.7
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.4e-26 122.9 141 53.2
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 5.3e-26 121.7 174 47.7
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 1.2e-25 120.6 177 46.9
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.2e-24 116.3 154 48.7
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 6.5e-24 114.8 185 42.7
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 6.5e-24 114.8 170 50.0
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 3.2e-23 112.5 173 48.0
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 5.5e-23 111.7 178 46.1
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.2e-22 110.5 183 45.4
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.6e-22 110.2 178 48.9
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.7e-22 108.6 183 48.1
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 8.0e-22 107.8 175 45.1
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.0e-21 107.5 181 44.2
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 2.3e-21 106.3 196 42.9
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 2.3e-21 106.3 195 46.7
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 2.3e-21 106.3 191 43.5
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 5.2e-21 105.1 179 45.3
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 5.2e-21 105.1 178 47.2
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 6.7e-21 104.8 185 43.8
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 8.8e-21 104.4 177 45.2
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 8.8e-21 104.4 150 52.0
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 8.8e-21 104.4 178 46.6
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.1e-20 104.0 132 51.5
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-20 103.6 191 44.0
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.5e-20 103.6 191 44.0
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 2.6e-20 102.8 195 42.6
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 3.3e-20 102.4 191 45.0
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 4.4e-20 102.1 183 45.9
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 5.7e-20 101.7 184 42.9
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 7.4e-20 101.3 191 44.5
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.3e-19 100.5 171 45.6
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.7e-19 100.1 183 42.1
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.7e-19 100.1 187 46.5
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 1.7e-19 100.1 179 43.6
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.2e-19 99.8 177 42.4
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 3.7e-19 99.0 192 43.2
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.8e-19 98.6 180 43.9
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 6.3e-19 98.2 154 48.7
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-18 97.4 189 41.3
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-18 97.4 187 41.7
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.8e-18 96.7 133 48.1
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.8e-18 96.7 181 45.9
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.1e-18 95.9 178 46.6
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 3.1e-18 95.9 187 41.7
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 3.1e-18 95.9 187 41.7
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-18 95.5 183 42.6
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.1e-18 95.5 135 48.9
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 4.1e-18 95.5 189 41.8
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 7.0e-18 94.7 187 41.2
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 7.0e-18 94.7 187 41.2
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 9.1e-18 94.4 174 44.8
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.6e-17 93.6 179 41.3
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.0e-17 93.2 188 41.0
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.0e-17 93.2 182 43.4
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.0e-17 93.2 188 41.0
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.0e-17 93.2 182 43.4
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.0e-17 93.2 180 40.6
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 2.6e-17 92.8 194 39.7
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 2.6e-17 92.8 185 43.2
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 2.6e-17 92.8 185 43.2
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 2.6e-17 92.8 185 43.2
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.5e-17 92.4 180 43.3
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 4.5e-17 92.0 183 43.2
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 5.9e-17 91.7 184 43.5
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 5.9e-17 91.7 187 41.2
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 7.7e-17 91.3 191 41.9
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.3e-16 90.5 179 40.8
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.3e-16 90.5 188 42.0
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.2e-16 89.7 185 40.5
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 2.9e-16 89.4 133 47.4
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 5.0e-16 88.6 194 39.7
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 8.5e-16 87.8 130 47.7
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-15 87.4 188 39.9
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.1e-15 87.4 185 39.5
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-15 87.0 188 39.4
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.5e-15 87.0 188 39.4
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.9e-15 86.7 183 43.2
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.9e-15 86.7 181 39.8
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.5e-15 86.3 180 40.0
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 3.2e-15 85.9 188 43.1
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 4.2e-15 85.5 170 41.2
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 7.2e-15 84.7 189 39.7
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 7.2e-15 84.7 149 43.6
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 9.4e-15 84.3 128 46.9
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 1.2e-14 84.0 173 39.9
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.2e-14 84.0 178 39.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 1.6e-14 83.6 122 44.3
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.6e-14 83.6 184 39.1
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.7e-14 82.8 184 39.1
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-13 80.5 188 39.4
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.4e-13 80.5 188 39.4
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.8e-13 80.1 145 39.3
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 2.3e-13 79.7 185 40.0
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 2.3e-13 79.7 185 40.0
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 8.8e-13 77.8 81 55.6
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 8.8e-13 77.8 188 36.7
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 2.0e-12 76.6 184 37.0
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 4.4e-12 75.5 170 39.4
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 4.4e-12 75.5 76 56.6
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 7.5e-12 74.7 73 61.6
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 9.7e-12 74.3 75 56.0
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.8e-10 70.1 178 36.5
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 1.8e-10 70.1 171 38.0
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.0e-08 64.3 181 37.0
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 3.8e-08 62.4 71 52.1
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 8.5e-08 61.2 134 38.1
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.9e-07 60.1 175 37.1
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 7.2e-07 58.2 162 35.2
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 8.0e-06 54.7 169 34.9


User provided reference genes

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