Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 1.0e-39 166.4 91 100.0
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 1.2e-19 99.8 91 68.1
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 4.5e-19 97.8 92 59.8
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 7.6e-19 97.1 91 63.7
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 7.6e-19 97.1 91 63.7
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 3.8e-18 94.7 91 59.3
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 5.0e-18 94.4 92 58.7
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 6.5e-18 94.0 90 57.8
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.9e-17 92.4 90 57.8
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 2.5e-17 92.0 81 61.7
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 3.2e-17 91.7 89 65.2
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 4.2e-17 91.3 81 60.5
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 9.3e-17 90.1 91 58.2
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 9.3e-17 90.1 92 58.7
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 1.2e-16 89.7 92 57.6
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 3.6e-16 88.2 92 55.4
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 1.0e-15 86.7 94 54.3
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 2.3e-15 85.5 92 56.5
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 2.3e-15 85.5 91 54.9
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 6.7e-15 84.0 92 54.3
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 6.7e-15 84.0 90 50.0
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 6.7e-15 84.0 90 50.0
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 6.7e-15 84.0 90 50.0
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 1.5e-14 82.8 89 55.1
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 2.5e-14 82.0 89 58.4
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 4.3e-14 81.3 89 56.2
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 9.7e-14 80.1 95 54.7
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 2.2e-13 79.0 84 58.3
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 2.8e-13 78.6 92 53.3
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 8.2e-13 77.0 93 49.5
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.8e-12 75.9 91 54.9
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 9.1e-12 73.6 92 47.8
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 1.5e-11 72.8 89 51.7
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 2.0e-11 72.4 84 52.4
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 2.6e-11 72.0 91 54.9
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 3.4e-11 71.6 104 45.2
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 4.5e-11 71.2 86 47.7
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 1.0e-10 70.1 93 46.2
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 1.0e-10 70.1 80 61.2
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 1.0e-10 70.1 80 53.8
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 1.3e-10 69.7 95 46.3
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 1.3e-10 69.7 84 54.8
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 1.7e-10 69.3 86 47.7
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 1.7e-10 69.3 93 47.3
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 1.4e-09 66.2 82 58.5
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 1.9e-09 65.9 82 51.2
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 1.9e-09 65.9 92 41.3
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 2.5e-09 65.5 91 41.8
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 2.5e-09 65.5 91 45.1
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 7.2e-09 63.9 95 46.3
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 2.7e-08 62.0 98 38.8
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 6.1e-08 60.8 91 47.3
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 7.9e-08 60.5 90 45.6
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 7.9e-08 60.5 92 41.3
Manes.12G082200 Manihot esculenta HOM05D007836 ORTHO05D009876 1.4e-07 59.7 76 50.0
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 1.8e-07 59.3 98 45.9
Carub.0001s3183 Capsella rubella HOM05D000831 ORTHO05D000660 2.3e-07 58.9 47 63.8
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 2.3e-07 58.9 90 46.7
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 3.0e-07 58.5 98 45.9
MBI02_g37332_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 3.0e-07 58.5 44 63.6
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 5.1e-07 57.8 92 42.4
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 8.8e-07 57.0 73 54.8
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 8.8e-07 57.0 73 54.8
Thhalv10009208m.g Eutrema salsugineum HOM05D000831 ORTHO05D000660 1.1e-06 56.6 46 65.2
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.1e-06 56.6 73 47.9
MBI02_g37328_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 1.5e-06 56.2 44 61.4
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 2.0e-06 55.8 79 45.6
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 2.0e-06 55.8 78 43.6
MBI02_g37331_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.6e-06 55.5 44 61.4
MBI02_g37334_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.6e-06 55.5 44 61.4
MBI02_g44823_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.6e-06 55.5 44 61.4
BcaB07g32973 Brassica carinata HOM05D000831 ORTHO05D000660 3.3e-06 55.1 44 68.2
BcaB07g32979 Brassica carinata HOM05D000831 ORTHO05D000660 3.3e-06 55.1 44 68.2
MBI02_g37329_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 3.3e-06 55.1 44 59.1
Sopen02g024060 Solanum pennellii HOM05D007836 ORTHO05D009876 3.3e-06 55.1 87 47.1
BraA09t38831Z Brassica rapa HOM05D000831 ORTHO05D000660 4.4e-06 54.7 44 68.2
AL1G47760 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 5.7e-06 54.3 45 62.2
Eucgr.E03817 Eucalyptus grandis HOM05D038013 ORTHO05D009876 5.7e-06 54.3 75 45.3
MBI02_g37326_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 7.4e-06 53.9 48 58.3
A09p32920 Brassica napus HOM05D000831 ORTHO05D000660 9.7e-06 53.5 44 65.9
BraA09t38833Z Brassica rapa HOM05D000831 ORTHO05D000660 9.7e-06 53.5 44 65.9
BraA09t38834Z Brassica rapa HOM05D000831 ORTHO05D000660 9.7e-06 53.5 44 65.9
AUR62029301 Chenopodium quinoa HOM05D000831 ORTHO05D000660 9.7e-06 53.5 44 61.4
Oeu014597.1 Olea europaea HOM05D000831 ORTHO05D000660 9.7e-06 53.5 44 59.1
Potri.013G148300 Populus trichocarpa HOM05D007836 ORTHO05D009876 9.7e-06 53.5 88 43.2


User provided reference genes

Program Settings