Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2034 Trochodendron aralioides HOM05D000084 ORTHO05D014724 4.3e-56 221.1 112 100.0
TAR371G0658 Trochodendron aralioides HOM05D000084 ORTHO05D002355 8.2e-39 163.7 99 83.8
Nn4g23298 Nelumbo nucifera HOM05D000084 ORTHO05D002355 8.5e-36 153.7 104 76.0
Aqoxy3G03513 Aquilegia oxysepala HOM05D000084 ORTHO05D002355 2.0e-29 132.5 114 66.7
TAR374G0194 Trochodendron aralioides HOM05D000084 ORTHO05D002355 2.0e-29 132.5 99 73.7
Dinv38753 Davidia involucrata HOM05D000084 ORTHO05D002355 6.5e-28 127.5 105 68.6
Dinv10663 Davidia involucrata HOM05D000084 ORTHO05D002355 2.5e-27 125.6 107 68.2
MBI19_g28318_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D002355 2.5e-27 125.6 101 70.3
Hma1.2p1_0060F.1_g033440 Hydrangea macrophylla HOM05D000084 ORTHO05D002355 4.2e-27 124.8 104 69.2
Actinidia04861 Actinidia chinensis HOM05D000084 ORTHO05D002355 5.5e-27 124.4 102 69.6
vmacro17579 Vaccinium macrocarpon HOM05D000084 ORTHO05D002355 2.7e-26 122.1 106 66.0
PGR083G1953 Punica granatum HOM05D000084 ORTHO05D002355 4.7e-26 121.3 107 66.4
Rhsim08G0150700 Rhododendron simsii HOM05D000084 ORTHO05D002355 6.1e-26 120.9 105 65.7
Prupe.5G199000 Prunus persica HOM05D000084 ORTHO05D002355 1.4e-25 119.8 113 62.8
Actinidia37605 Actinidia chinensis HOM05D000084 ORTHO05D002355 2.3e-25 119.0 102 66.7
Eucgr.B00551 Eucalyptus grandis HOM05D000084 ORTHO05D002355 3.9e-25 118.2 114 60.5
MD14G1205700 Malus domestica HOM05D000084 ORTHO05D002355 3.9e-25 118.2 112 62.5
CiPaw.11G048000 Carya illinoinensis HOM05D000084 ORTHO05D002355 8.8e-25 117.1 111 66.7
ClCG04G012050 Citrullus lanatus HOM05D000084 ORTHO05D002355 2.0e-24 115.9 112 59.8
CsaV3_1G005720 Cucumis sativus L. HOM05D000084 ORTHO05D002355 2.0e-24 115.9 113 60.2
DCAR_026033 Daucus carota HOM05D000084 ORTHO05D002355 2.6e-24 115.5 108 64.8
RcHm_v2.0_Chr7g0182181 Rosa chinensis HOM05D000084 ORTHO05D002355 2.6e-24 115.5 104 62.5
MELO3C002003.2 Cucumis melo HOM05D000084 ORTHO05D002355 3.3e-24 115.2 113 60.2
Haze_07656 Corylus avellana HOM05D000084 ORTHO05D002355 4.4e-24 114.8 107 63.6
Haze_07659 Corylus avellana HOM05D000084 ORTHO05D002355 4.4e-24 114.8 107 63.6
CSS0033037 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002355 5.7e-24 114.4 104 61.5
MD06G1198100 Malus domestica HOM05D000084 ORTHO05D002355 9.7e-24 113.6 112 59.8
GSVIVG01007956001 Vitis vinifera HOM05D000084 ORTHO05D002355 9.7e-24 113.6 104 67.3
Peaxi162Scf00274g00119 Petunia axillaris HOM05D000084 ORTHO05D002355 2.8e-23 112.1 105 61.9
COL.COLO4_35590 Corchorus olitorius HOM05D000084 ORTHO05D002355 6.3e-23 110.9 127 56.7
Nitab4.5_0001211g0120 Nicotiana tabacum HOM05D000084 ORTHO05D002355 6.3e-23 110.9 107 60.7
Duzib205G1782 Durio zibethinus HOM05D000084 ORTHO05D002355 8.2e-23 110.5 124 58.9
CANSAT80G1751 Cannabis sativa HOM05D000084 ORTHO05D002355 1.1e-22 110.2 123 57.7
Nitab4.5_0002756g0080 Nicotiana tabacum HOM05D000084 ORTHO05D002355 1.1e-22 110.2 111 58.6
HanXRQChr02g0041751 Helianthus annuus HOM05D000084 ORTHO05D002355 4.1e-22 108.2 118 59.3
Duzib068G0036 Durio zibethinus HOM05D000084 ORTHO05D002355 7.0e-22 107.5 127 54.3
Lj5A107T97 Lonicera japonica HOM05D000084 ORTHO05D002355 7.0e-22 107.5 99 58.6
Phvul.009G184700 Phaseolus vulgaris HOM05D000084 ORTHO05D002355 1.6e-21 106.3 102 63.7
Thecc.03G094900 Theobroma cacao HOM05D000084 ORTHO05D002355 1.6e-21 106.3 127 54.3
Cpa.g.sc13.302 Carica papaya HOM05D000084 ORTHO05D002355 4.5e-21 104.8 124 56.5
Lsat_1_v5_gn_1_13860 Lactuca sativa HOM05D000084 ORTHO05D002355 4.5e-21 104.8 117 58.1
VMungo1309G0183 Vigna mungo HOM05D000084 ORTHO05D002355 4.5e-21 104.8 102 61.8
Glyma.06G196900 Glycine max HOM05D000084 ORTHO05D002355 1.3e-20 103.2 102 59.8
Gorai.006G267300 Gossypium raimondii HOM05D000084 ORTHO05D002355 1.3e-20 103.2 126 54.0
CDE04G1422 Ceratophyllum demersum HOM05D000084 ORTHO05D002355 1.7e-20 102.8 99 53.5
FAN08G3225 Fragaria x ananassa HOM05D000084 ORTHO05D002355 1.7e-20 102.8 103 57.3
Gohir.A03G067900 Gossypium hirsutum HOM05D000084 ORTHO05D002355 1.7e-20 102.8 122 54.9
arahy.Tifrunner.gnm1.ann1.UER72I Arachis hypogaea HOM05D000084 ORTHO05D002355 2.2e-20 102.4 99 60.6
CAN.G479.53 Capsicum annuum HOM05D000084 ORTHO05D002355 2.2e-20 102.4 108 55.6
Gohir.D09G243500 Gossypium hirsutum HOM05D000084 ORTHO05D002355 3.8e-20 101.7 126 53.2
ATR0730G122 Amborella trichopoda HOM05D000084 ORTHO05D002355 5.0e-20 101.3 106 54.7
Duzib084G1048 Durio zibethinus HOM05D000084 ORTHO05D002355 5.0e-20 101.3 124 53.2
FvH4_5g14470 Fragaria vesca HOM05D000084 ORTHO05D002355 5.0e-20 101.3 103 59.2
Gohir.D03G094400 Gossypium hirsutum HOM05D000084 ORTHO05D002355 5.0e-20 101.3 122 54.9
Gorai.003G098600 Gossypium raimondii HOM05D000084 ORTHO05D002355 5.0e-20 101.3 122 54.9
Solyc03g115660.3 Solanum lycopersicum HOM05D000084 ORTHO05D002355 5.0e-20 101.3 108 58.3
arahy.Tifrunner.gnm1.ann1.08V5V4 Arachis hypogaea HOM05D000084 ORTHO05D002355 6.5e-20 100.9 99 58.6
CDE07G1532 Ceratophyllum demersum HOM05D000084 ORTHO05D002355 6.5e-20 100.9 99 53.5
Ciclev10019086m.g Citrus clementina HOM05D000084 ORTHO05D002355 6.5e-20 100.9 118 55.9
FAN18G4015 Fragaria x ananassa HOM05D000084 ORTHO05D002355 6.5e-20 100.9 103 59.2
Gohir.A09G242800 Gossypium hirsutum HOM05D000084 ORTHO05D002355 6.5e-20 100.9 125 53.6
Glyma.04G165600 Glycine max HOM05D000084 ORTHO05D002355 1.5e-19 99.8 101 60.4
Oeu047271.2 Olea europaea HOM05D000084 ORTHO05D002355 1.9e-19 99.4 107 59.8
Lj9A468T57 Lonicera japonica HOM05D000084 ORTHO05D002355 2.5e-19 99.0 106 60.4
Hund02620 Selenicereus undatus HOM05D000084 ORTHO05D002355 2.5e-19 99.0 101 58.4
Sc04g0002920 Simmondsia chinensis HOM05D000084 ORTHO05D002355 2.5e-19 99.0 100 59.0
ECA247G2521 Erigeron canadensis HOM05D000084 ORTHO05D002355 3.2e-19 98.6 108 56.5
Sed0023315 Sechium edule HOM05D000084 ORTHO05D002355 3.2e-19 98.6 102 56.9
FAN13G0189 Fragaria x ananassa HOM05D000084 ORTHO05D002355 4.2e-19 98.2 104 56.7
EL10Ac5g11070 Beta vulgaris HOM05D000084 ORTHO05D002355 7.2e-19 97.4 100 58.0
MSTRG.11364 Avicennia marina HOM05D000084 ORTHO05D002355 9.4e-19 97.1 114 55.3
Sabra12G0047600 Salix brachista HOM05D000084 ORTHO05D002355 9.4e-19 97.1 103 58.3
Sopen03g034650 Solanum pennellii HOM05D000084 ORTHO05D002355 9.4e-19 97.1 111 55.9
PGSC0003DMG400024559 Solanum tuberosum HOM05D000084 ORTHO05D002355 9.4e-19 97.1 111 55.9
Lsat_1_v5_gn_5_21360 Lactuca sativa HOM05D000084 ORTHO05D000574 1.2e-18 96.7 115 53.9
Manes.14G082300 Manihot esculenta HOM05D000084 ORTHO05D002355 1.6e-18 96.3 101 57.4
CSS0037843 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002355 4.7e-18 94.7 108 55.6
AUR62021623 Chenopodium quinoa HOM05D000084 ORTHO05D002355 6.1e-18 94.4 100 59.0
Nn3g17351 Nelumbo nucifera HOM05D000084 ORTHO05D002355 6.1e-18 94.4 102 52.0
QL10p017952 Quercus lobata HOM05D000084 ORTHO05D002355 6.1e-18 94.4 121 52.9
Oeu052463.1 Olea europaea HOM05D000084 ORTHO05D002355 8.0e-18 94.0 107 58.9
Aa31LG7G3430 Aethionema arabicum HOM05D000084 ORTHO05D002355 1.0e-17 93.6 115 52.2
AUR62008470 Chenopodium quinoa HOM05D000084 ORTHO05D002355 1.0e-17 93.6 99 56.6
Migut.I00222 Erythranthe guttata HOM05D000084 ORTHO05D002355 1.0e-17 93.6 111 55.9
HanXRQChr10g0318551 Helianthus annuus HOM05D000084 ORTHO05D002355 1.0e-17 93.6 111 53.2
Manes.06G088800 Manihot esculenta HOM05D000084 ORTHO05D002355 1.0e-17 93.6 103 56.3
Potri.012G067800 Populus trichocarpa HOM05D000084 ORTHO05D002355 1.0e-17 93.6 101 56.4
Sp1g16650 Schrenkiella parvula HOM05D000084 ORTHO05D002355 1.8e-17 92.8 113 52.2
TWI60G0697 Tripterygium wilfordii HOM05D000084 ORTHO05D002355 1.8e-17 92.8 100 58.0
Phvul.003G187700 Phaseolus vulgaris HOM05D000084 ORTHO05D002355 3.0e-17 92.0 101 55.4
Potri.015G061400 Populus trichocarpa HOM05D000084 ORTHO05D002355 3.0e-17 92.0 108 51.9
A08p30270 Brassica napus HOM05D000084 ORTHO05D002355 4.0e-17 91.7 117 53.8
Glyma.05G024400 Glycine max HOM05D000084 ORTHO05D002355 4.0e-17 91.7 101 56.4
BcaB03g14491 Brassica carinata HOM05D000084 ORTHO05D002355 6.7e-17 90.9 100 55.0
BcaC07g38935 Brassica carinata HOM05D000084 ORTHO05D002355 6.7e-17 90.9 117 52.1
Glyma.17G102900 Glycine max HOM05D000084 ORTHO05D002355 6.7e-17 90.9 101 56.4
Sp5g29490 Schrenkiella parvula HOM05D000084 ORTHO05D002355 6.7e-17 90.9 108 50.9
C08p18820 Brassica napus HOM05D000084 ORTHO05D002355 8.8e-17 90.5 117 52.1
BraA08t34960Z Brassica rapa HOM05D000084 ORTHO05D002355 1.2e-16 90.1 118 51.7
VMungo1215G1504 Vigna mungo HOM05D000084 ORTHO05D002355 1.2e-16 90.1 101 54.5
Ah.02g113810 Amaranthus hybridus HOM05D000084 ORTHO05D002355 1.5e-16 89.7 100 55.0
Thhalv10018206m.g Eutrema salsugineum HOM05D000084 ORTHO05D002355 2.6e-16 89.0 109 51.4
Lj1g0011445 Lotus japonicus HOM05D000084 ORTHO05D002355 2.6e-16 89.0 100 55.0
THA.LOC104813885 Tarenaya hassleriana HOM05D000084 ORTHO05D002355 3.3e-16 88.6 113 51.3
BcaC07g41311 Brassica carinata HOM05D000084 ORTHO05D002355 4.4e-16 88.2 100 51.0
BcaC08g46863 Brassica carinata HOM05D000084 ORTHO05D002355 4.4e-16 88.2 110 48.2
A07p40140 Brassica napus HOM05D000084 ORTHO05D002355 4.4e-16 88.2 110 48.2
C06p48500 Brassica napus HOM05D000084 ORTHO05D002355 4.4e-16 88.2 110 48.2
BolC6t39878H Brassica oleracea HOM05D000084 ORTHO05D002355 4.4e-16 88.2 110 48.2
BolC8t51873H Brassica oleracea HOM05D000084 ORTHO05D002355 4.4e-16 88.2 100 51.0
CARHR019300 Cardamine hirsuta HOM05D000084 ORTHO05D002355 4.4e-16 88.2 109 52.3
Thhalv10006926m.g Eutrema salsugineum HOM05D000084 ORTHO05D002355 4.4e-16 88.2 116 50.9
Sabra15G0086300 Salix brachista HOM05D000084 ORTHO05D002355 4.4e-16 88.2 108 53.7
CARHR067590 Cardamine hirsuta HOM05D000084 ORTHO05D002355 5.7e-16 87.8 108 51.9
Hund09836 Selenicereus undatus HOM05D000084 ORTHO05D002355 5.7e-16 87.8 104 54.8
BraA07t31558Z Brassica rapa HOM05D000084 ORTHO05D002355 9.7e-16 87.0 110 47.3
Sed0024578 Sechium edule HOM05D000084 ORTHO05D002355 9.7e-16 87.0 101 57.4
Aa31LG4G4580 Aethionema arabicum HOM05D000084 ORTHO05D002355 1.3e-15 86.7 111 51.4
SGA_v2.0_scaffold313G48322 Striga asiatica HOM05D000084 ORTHO05D002355 1.3e-15 86.7 106 55.7
AL2G34190 Arabidopsis lyrata HOM05D000084 ORTHO05D002355 2.8e-15 85.5 109 49.5
AT1G18670 Arabidopsis thaliana HOM05D000084 ORTHO05D002355 2.8e-15 85.5 116 52.6
AT1G74330 Arabidopsis thaliana HOM05D000084 ORTHO05D002355 2.8e-15 85.5 116 46.6
Carub.0002s2111 Capsella rubella HOM05D000084 ORTHO05D002355 2.8e-15 85.5 110 49.1
PSO063G0712 Papaver somniferum HOM05D000084 ORTHO05D002355 2.8e-15 85.5 123 48.0
TWI81G0133 Tripterygium wilfordii HOM05D000084 ORTHO05D002355 2.8e-15 85.5 100 56.0
AL1G31120 Arabidopsis lyrata HOM05D000084 ORTHO05D002355 3.7e-15 85.1 111 50.5
BcaB03g12967 Brassica carinata HOM05D000084 ORTHO05D002355 3.7e-15 85.1 113 50.4
CiPaw.12G011500 Carya illinoinensis HOM05D000084 ORTHO05D002355 4.8e-15 84.7 112 50.0
Psat4g048800 Pisum sativum HOM05D000084 ORTHO05D002355 6.3e-15 84.3 101 56.4
Carub.0001s1830 Capsella rubella HOM05D000084 ORTHO05D002355 1.1e-14 83.6 110 51.8
Cc04_g14330 Coffea canephora HOM05D000084 ORTHO05D002355 1.1e-14 83.6 126 43.7
Medtr4g109090 Medicago truncatula HOM05D000084 ORTHO05D002355 5.3e-14 81.3 103 51.5
unitig_749.g13438 Utricularia gibba HOM05D000084 ORTHO05D002355 7.0e-14 80.9 109 52.3
PSO063G6448 Papaver somniferum HOM05D000084 ORTHO05D002355 9.1e-14 80.5 127 44.1
Lalb_Chr13g0303051 Lupinus albus HOM05D000084 ORTHO05D002355 1.2e-13 80.1 100 51.0
HPP92_023619 Vanilla planifolia HOM05D000084 ORTHO05D014724 1.2e-13 80.1 101 45.5
HPP92_023644 Vanilla planifolia HOM05D000084 ORTHO05D014724 1.2e-13 80.1 101 45.5
Dinv33793 Davidia involucrata HOM05D000084 ORTHO05D002355 2.0e-13 79.3 112 47.3
ECA246G2821 Erigeron canadensis HOM05D000084 ORTHO05D002355 2.0e-13 79.3 114 47.4
C08p43190 Brassica napus HOM05D000084 ORTHO05D002355 3.5e-13 78.6 100 49.0
Ca_21803_v3 Cicer arietinum L. HOM05D000084 ORTHO05D002355 3.5e-13 78.6 100 51.0
PSO478G1209 Papaver somniferum HOM05D000084 ORTHO05D002355 3.5e-13 78.6 105 52.4
TPR.G2029 Trifolium pratense HOM05D000084 ORTHO05D002355 1.3e-12 76.6 103 49.5
Atru.chr9.305 Acer truncatum HOM05D000084 ORTHO05D002355 1.7e-12 76.3 99 52.5
Nitab4.5_0008485g0010 Nicotiana tabacum HOM05D000084 ORTHO05D002355 2.2e-12 75.9 101 47.5
Ca_13859_v3 Cicer arietinum L. HOM05D000084 ORTHO05D002355 2.9e-12 75.5 103 50.5
Nitab4.5_0001997g0020 Nicotiana tabacum HOM05D000084 ORTHO05D002355 3.8e-12 75.1 106 50.0
BolC8t49509H Brassica oleracea HOM05D000084 ORTHO05D002355 5.0e-12 74.7 111 45.0
Lalb_Chr12g0197021 Lupinus albus HOM05D000084 ORTHO05D002355 5.0e-12 74.7 100 49.0
CSS0030926 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D014724 4.2e-11 71.6 48 77.1
Hma1.2p1_0097F.1_g048140 Hydrangea macrophylla HOM05D000084 ORTHO05D002355 6.1e-10 67.8 119 42.0
HPP92_015886 Vanilla planifolia HOM05D000084 ORTHO05D002355 8.0e-10 67.4 105 43.8
Zm00001eb108400 Zea mays HOM05D000084 ORTHO05D002355 1.4e-09 66.6 112 41.1
Zm00001eb326620 Zea mays HOM05D000084 ORTHO05D002355 1.4e-09 66.6 112 42.9
arahy.Tifrunner.gnm1.ann1.GXY79M Arachis hypogaea HOM05D000084 ORTHO05D002355 4.0e-09 65.1 99 42.4
arahy.Tifrunner.gnm1.ann1.XZ331S Arachis hypogaea HOM05D000084 ORTHO05D002355 4.0e-09 65.1 99 42.4
TPR.G11419 Trifolium pratense HOM05D000084 ORTHO05D014724 5.2e-09 64.7 102 44.1
TWI32G0550 Tripterygium wilfordii HOM05D000084 ORTHO05D002355 5.2e-09 64.7 117 38.5
Peaxi162Scf00106g00514 Petunia axillaris HOM05D000084 ORTHO05D002355 8.8e-09 63.9 61 60.7
GSVIVG01011471001 Vitis vinifera HOM05D000084 ORTHO05D002355 1.5e-08 63.2 132 35.6
Lj4g0000178 Lotus japonicus HOM05D000084 ORTHO05D002355 2.0e-08 62.8 99 44.4
Thecc.04G088500 Theobroma cacao HOM05D000084 ORTHO05D002355 4.4e-08 61.6 114 37.7
Gohir.A09G012500 Gossypium hirsutum HOM05D000084 ORTHO05D002355 5.7e-08 61.2 110 37.3
COL.COLO4_12241 Corchorus olitorius HOM05D000084 ORTHO05D002355 2.2e-07 59.3 112 36.6
Duzib147G1707 Durio zibethinus HOM05D000084 ORTHO05D002355 2.2e-07 59.3 114 36.8
Gohir.D09G011400 Gossypium hirsutum HOM05D000084 ORTHO05D002355 2.2e-07 59.3 110 36.4
PGR056G0003 Punica granatum HOM05D000084 ORTHO05D002355 2.2e-07 59.3 101 39.6
Os07g0596600 Oryza sativa ssp. japonica HOM05D000084 ORTHO05D002355 3.7e-07 58.5 114 37.7
Actinidia01956 Actinidia chinensis HOM05D000084 ORTHO05D002355 4.8e-07 58.2 115 42.6
Eucgr.G00872 Eucalyptus grandis HOM05D000084 ORTHO05D002355 4.8e-07 58.2 110 40.9
QL02p085081 Quercus lobata HOM05D000084 ORTHO05D002355 6.3e-07 57.8 109 34.9
Ca_04859_v3 Cicer arietinum L. HOM05D000084 ORTHO05D002355 1.1e-06 57.0 100 35.0
Lju41C8G7 Lonicera japonica HOM05D000084 ORTHO05D002355 1.1e-06 57.0 103 38.8
Lj2g0022545 Lotus japonicus HOM05D000084 ORTHO05D002355 1.1e-06 57.0 104 39.4
SEGI_27084 Sequoiadendron giganteum HOM05D000084 ORTHO05D000363 1.4e-06 56.6 103 38.8
Actinidia06109 Actinidia chinensis HOM05D000084 ORTHO05D002355 1.8e-06 56.2 119 40.3
Duzib264G1001 Durio zibethinus HOM05D000084 ORTHO05D002355 2.4e-06 55.8 114 32.5
Gorai.006G013200 Gossypium raimondii HOM05D000084 ORTHO05D002355 2.4e-06 55.8 110 35.5
SGA_v2.0_scaffold89G27553 Striga asiatica HOM05D000084 ORTHO05D000363 4.1e-06 55.1 130 33.8
CANSAT64G0083 Cannabis sativa HOM05D000084 ORTHO05D002355 5.4e-06 54.7 100 34.0
Medtr6g013030 Medicago truncatula HOM05D000084 ORTHO05D002355 9.1e-06 53.9 107 33.6


User provided reference genes

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