Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.8e-90 335.9 167 100.0
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.1e-79 297.4 157 93.6
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.2e-70 270.0 168 76.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.0e-69 266.9 164 79.9
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 7.3e-68 260.8 167 77.2
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.8e-67 258.8 163 76.7
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-66 256.9 167 76.0
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.1e-66 256.9 168 73.2
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.1e-66 256.9 168 75.6
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.9e-66 254.2 169 72.8
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.6e-65 252.3 168 71.4
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 2.6e-65 252.3 163 74.2
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 4.5e-65 251.5 168 72.0
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.7e-64 249.6 164 73.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.7e-64 249.6 164 73.8
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.1e-63 246.9 168 72.6
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.1e-63 246.9 168 73.8
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.4e-63 245.7 168 72.0
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.4e-63 245.7 164 73.8
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.6e-62 243.0 164 75.0
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.1e-62 242.7 164 70.7
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.1e-62 242.7 163 72.4
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 6.0e-62 241.1 168 70.8
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 6.0e-62 241.1 167 69.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.8e-61 239.6 164 71.3
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.0e-61 238.8 163 70.6
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 5.1e-61 238.0 163 69.9
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 8.7e-61 237.3 163 71.8
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.1e-60 236.9 167 69.5
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.5e-60 236.5 163 69.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 4.3e-60 235.0 164 68.9
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.6e-59 233.0 164 68.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.1e-59 232.6 168 69.6
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 3.7e-59 231.9 161 69.6
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 4.0e-58 228.4 161 68.9
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.3e-58 228.0 171 66.1
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 5.3e-58 228.0 163 67.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 6.9e-58 227.6 171 66.1
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 9.0e-58 227.3 172 66.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.2e-57 226.9 163 67.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.6e-57 225.7 171 65.5
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.6e-57 225.7 161 67.7
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.4e-57 225.3 165 67.3
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.4e-57 225.3 169 67.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 7.6e-57 224.2 163 64.4
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 7.6e-57 224.2 161 64.6
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 9.9e-57 223.8 159 68.6
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 2.2e-56 222.6 163 69.9
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.9e-56 222.2 160 68.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 6.4e-56 221.1 163 68.7
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 8.4e-56 220.7 162 66.7
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.4e-55 219.9 162 63.6
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.9e-55 219.5 163 69.3
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 3.2e-55 218.8 167 62.3
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.2e-55 218.4 165 64.8
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 9.3e-55 217.2 159 66.0
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 1.6e-54 216.5 158 67.7
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.1e-54 216.1 163 62.6
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.1e-54 216.1 168 60.1
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 2.1e-54 216.1 168 63.1
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.7e-54 215.7 168 61.9
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 6.0e-54 214.5 160 65.0
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.8e-53 213.0 168 61.9
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 2.3e-53 212.6 167 63.5
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.9e-53 211.8 168 61.9
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 5.1e-53 211.5 159 66.0
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 5.1e-53 211.5 175 62.9
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 8.7e-53 210.7 164 62.2
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.1e-52 210.3 166 63.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 5.6e-52 208.0 172 60.5
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.6e-51 206.5 164 65.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.8e-51 205.7 171 60.8
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.8e-51 205.7 164 64.6
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.8e-51 205.7 163 62.0
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.8e-51 205.7 166 63.9
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 3.7e-51 205.3 135 76.3
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 6.2e-51 204.5 158 67.1
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 6.2e-51 204.5 164 64.6
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 8.2e-51 204.1 158 66.5
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.1e-50 203.8 161 63.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.1e-50 203.8 168 59.5
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.4e-50 203.4 164 64.0
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.4e-50 203.4 164 64.0
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.8e-50 203.0 166 61.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.4e-50 202.6 166 62.0
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.0e-50 201.8 167 59.3
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 5.3e-50 201.4 166 60.8
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.3e-50 201.4 164 63.4
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.2e-49 200.3 164 64.6
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.6e-49 199.1 166 60.8
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 2.6e-49 199.1 159 63.5
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 5.8e-49 198.0 155 65.2
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.0e-48 197.2 167 58.7
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.0e-48 197.2 166 61.4
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 2.2e-48 196.1 168 59.5
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 3.8e-48 195.3 164 59.1
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.9e-48 194.9 127 69.3
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 6.5e-48 194.5 167 59.3
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 8.4e-48 194.1 167 59.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 8.4e-48 194.1 167 59.3
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 8.4e-48 194.1 168 60.1
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-47 193.7 167 59.3
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.5e-47 192.6 167 58.7
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 4.2e-47 191.8 167 58.7
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 6.0e-46 188.0 167 58.1
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.8e-45 186.4 153 63.4
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.9e-45 185.3 171 57.3
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.7e-45 184.5 167 55.7
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 2.5e-44 182.6 156 57.7
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 3.7e-43 178.7 131 67.9
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-42 177.2 167 55.7
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-42 176.8 166 56.0
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.4e-42 176.8 166 56.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.0e-40 170.6 126 63.5
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.9e-40 169.1 170 55.9
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 5.0e-40 168.3 119 67.2
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 8.5e-40 167.5 159 54.7
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-39 167.2 170 55.3
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.9e-39 166.4 161 55.3
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.9e-39 166.4 170 55.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 3.2e-39 165.6 127 64.6
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 4.2e-39 165.2 160 51.2
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.4e-37 160.2 127 69.3
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.3e-36 155.2 155 49.7
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 9.7e-36 154.1 98 73.5
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.7e-35 152.1 163 50.3
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 4.8e-35 151.8 112 64.3
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 5.3e-34 148.3 119 63.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.5e-33 146.7 127 58.3
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.4e-33 145.6 168 47.6
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 7.7e-33 144.4 125 59.2
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.7e-32 143.3 170 48.8
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 5.5e-31 138.3 103 61.2
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.7e-30 136.0 155 51.6
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 6.1e-30 134.8 149 44.3
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.0e-28 129.8 133 48.9
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 3.3e-28 129.0 128 47.7
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 7.4e-28 127.9 81 71.6
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 9.7e-28 127.5 121 48.8
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.3e-27 127.1 172 45.9
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.5e-23 111.7 88 62.5
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 4.7e-22 108.6 80 62.5
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.4e-21 107.1 147 42.9
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-19 100.5 163 39.9
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 4.8e-19 98.6 72 58.3
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.8e-18 96.7 100 47.0
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.5e-15 87.0 44 90.9
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.5e-15 86.3 101 41.6
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 3.6e-14 82.4 79 51.9
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.2e-12 77.4 60 68.3
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.6e-12 76.3 65 64.6
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.2e-11 73.2 63 47.6
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.1e-10 70.9 80 47.5
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 7.0e-10 68.2 97 41.2
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 9.1e-10 67.8 80 40.0
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 1.2e-09 67.4 63 60.3
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 2.0e-09 66.6 115 38.3
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.0e-09 66.6 64 57.8
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.7e-09 66.2 57 59.6
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.7e-09 64.7 57 61.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.7e-09 64.7 57 61.4
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-08 63.9 52 65.4
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-08 63.9 60 58.3
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 5.0e-08 62.0 105 35.2
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 4.2e-07 58.9 55 41.8
AUR62010916 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.1e-06 56.6 42 64.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.7e-06 55.5 62 53.2
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 6.1e-06 55.1 39 64.1


User provided reference genes

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