Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 0.0e+00 1540.0 897 100.0
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 1.1e-210 737.6 903 52.6
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.3e-206 724.2 604 73.8
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 7.1e-202 708.4 885 51.8
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 4.1e-197 692.6 912 45.5
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.0e-195 688.0 909 47.4
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.8e-192 677.2 902 47.9
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 1.3e-190 671.0 901 45.4
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 1.5e-188 664.1 898 47.1
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 2.6e-188 663.3 901 45.0
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 3.4e-188 662.9 900 46.0
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.5e-186 656.8 900 45.0
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 5.5e-186 655.6 899 45.2
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 2.7e-185 653.3 888 49.8
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.8e-184 650.6 898 44.2
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 1.5e-183 647.5 931 44.1
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 2.0e-183 647.1 920 46.7
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 1.1e-181 641.3 895 44.0
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 3.1e-181 639.8 899 48.7
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 5.9e-180 635.6 904 45.6
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 5.0e-179 632.5 920 44.8
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 5.5e-178 629.0 887 47.0
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 1.2e-177 627.9 915 43.3
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.6e-177 627.5 899 46.1
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 1.6e-177 627.5 923 44.9
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 1.1e-175 621.3 911 47.0
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 9.7e-175 618.2 917 43.6
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 9.7e-175 618.2 908 44.1
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 1.7e-174 617.5 906 46.1
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 1.7e-174 617.5 897 47.2
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 6.3e-174 615.5 964 44.3
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 1.6e-172 610.9 936 41.8
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 3.0e-168 596.7 843 44.2
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 2.2e-166 590.5 892 42.5
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 2.2e-166 590.5 905 42.0
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 3.7e-166 589.7 901 44.8
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 6.3e-166 589.0 892 42.6
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.6e-164 584.3 906 44.2
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 3.5e-164 583.2 898 45.9
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 3.5e-164 583.2 898 45.9
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 4.5e-164 582.8 909 42.5
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 1.6e-161 574.3 894 41.9
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 4.7e-161 572.8 891 41.9
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 8.0e-161 572.0 915 42.6
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.4e-160 571.2 867 42.4
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 5.2e-160 569.3 944 39.6
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 8.8e-160 568.5 912 41.4
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.5e-159 567.8 905 43.6
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 1.8e-157 560.8 943 39.8
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.4e-157 560.5 905 42.1
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 2.4e-157 560.5 943 39.4
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 4.1e-157 559.7 909 39.8
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.6e-156 557.8 957 39.0
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 2.9e-155 553.5 879 40.7
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 9.5e-154 548.5 869 42.0
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.1e-153 547.4 865 40.3
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 4.7e-153 546.2 886 40.4
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 3.0e-152 543.5 891 40.7
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 6.8e-152 542.3 819 42.9
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.0e-151 540.8 861 43.3
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 3.4e-151 540.0 870 41.3
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 4.4e-151 539.7 898 39.6
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 6.3e-150 535.8 905 41.1
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.8e-149 534.3 932 39.6
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 1.8e-149 534.3 900 41.3
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 9.5e-146 521.9 866 42.5
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 1.2e-145 521.5 883 40.3
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 1.2e-145 521.5 853 41.1
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 5.8e-143 512.7 884 40.0
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 9.2e-141 505.4 929 37.5
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 9.2e-141 505.4 899 39.8
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 2.0e-140 504.2 884 39.3
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 2.7e-140 503.8 880 38.9
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 1.0e-139 501.9 899 40.4
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 1.7e-139 501.1 983 37.5
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 8.6e-139 498.8 863 38.9
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 1.5e-138 498.0 883 39.0
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 3.4e-135 486.9 680 45.7
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 8.3e-134 482.3 821 40.2
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 3.5e-132 476.9 921 39.0
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 3.0e-131 473.8 900 38.6
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 1.1e-130 471.9 908 39.8
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.2e-129 468.4 844 37.9
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 9.9e-127 458.8 892 40.9
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 3.7e-126 456.8 894 37.7
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 6.0e-124 449.5 852 40.7
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 7.3e-122 442.6 810 38.1
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 1.2e-121 441.8 861 36.9
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 3.8e-118 430.3 908 39.3
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 8.4e-118 429.1 899 37.5
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 1.9e-117 427.9 857 36.3
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 5.4e-117 426.4 903 35.1
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 3.3e-114 417.2 841 35.7
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 2.1e-113 414.5 932 33.0
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 3.6e-113 413.7 824 35.9
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 1.5e-111 408.3 839 37.2
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 1.0e-99 369.0 898 36.0
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 3.3e-98 364.0 843 34.6
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 9.0e-96 355.9 881 36.7
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.5e-90 338.6 857 31.6
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 1.9e-90 338.2 939 34.9
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 1.9e-90 338.2 841 32.7
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 1.8e-88 331.6 742 34.4
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.9e-85 321.6 787 34.1
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.9e-85 321.6 874 31.2
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 5.5e-85 320.1 797 34.1
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 1.6e-84 318.5 931 34.0
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 1.0e-83 315.8 891 30.6
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 5.7e-82 310.1 739 32.9
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 3.1e-80 304.3 878 33.1
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.2e-79 302.4 874 31.2
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 1.7e-78 298.5 813 31.7
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 5.0e-78 297.0 870 31.3
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.4e-75 288.9 573 35.3
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 1.4e-75 288.9 464 43.1
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 6.7e-75 286.6 878 30.5
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 2.6e-71 274.6 877 33.0
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 4.2e-69 267.3 877 32.5
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 4.8e-65 253.8 877 32.2
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 3.2e-61 241.1 384 44.5
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 5.5e-61 240.4 900 27.6
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 2.7e-55 221.5 672 30.4
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 3.5e-55 221.1 760 28.0
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 7.2e-53 213.4 817 28.0
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 1.2e-50 206.1 637 30.9
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 6.3e-49 200.3 626 30.8
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 6.3e-49 200.3 626 30.8
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 1.8e-48 198.7 626 30.7
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 1.2e-47 196.1 682 28.4
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.2e-47 196.1 726 28.1
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 2.7e-47 194.9 596 31.0
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 4.5e-47 194.1 646 29.9
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 1.0e-46 193.0 615 29.6
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.2e-46 191.8 501 29.3
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.9e-45 188.7 167 65.3
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 4.2e-45 187.6 647 29.4
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.6e-44 185.7 668 26.6
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 4.7e-44 184.1 620 29.7
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 1.5e-42 179.1 719 27.4
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 4.9e-41 174.1 757 26.0
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 6.3e-41 173.7 774 25.7
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 1.1e-40 172.9 711 25.7
Nitab4.5_0002819g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 9.5e-37 159.8 323 35.3
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 8.0e-36 156.8 666 26.6
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 1.0e-35 156.4 663 27.8
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 2.0e-31 142.1 656 25.6
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.5e-29 135.2 338 32.5
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 6.2e-28 130.6 774 24.4
Dinv01742 Davidia involucrata HOM05D004088 ORTHO05D004736 6.8e-27 127.1 351 34.2
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 7.5e-26 123.6 276 31.5
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.9e-24 119.0 294 33.3
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 2.4e-24 118.6 129 53.5
CDE12G0814 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 3.9e-22 111.3 247 34.4
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 7.3e-21 107.1 274 33.6
Rhsim02G0161700 Rhododendron simsii HOM05D004088 ORTHO05D004736 3.4e-18 98.2 85 63.5
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 4.4e-18 97.8 946 21.2
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 4.1e-16 91.3 386 27.7
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 7.3e-13 80.5 387 21.4
BcaC05g27073 Brassica carinata HOM05D000169 ORTHO05D007693 2.8e-12 78.6 157 38.2
CDE12G0022 Ceratophyllum demersum HOM05D000617 ORTHO05D004736 3.1e-11 75.1 297 26.6
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 5.2e-11 74.3 945 21.4
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 2.0e-10 72.4 558 22.2
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 4.4e-10 71.2 936 22.2
HPP92_017739 Vanilla planifolia HOM05D004088 ORTHO05D004736 7.1e-08 63.9 301 27.6
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 9.2e-08 63.5 764 24.1
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.7e-07 62.0 526 20.9
SEGI_23472 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 3.5e-07 61.6 363 25.3
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 7.8e-07 60.5 577 19.8
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 1.0e-06 60.1 1123 19.6
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.7e-06 59.3 733 19.8
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 2.3e-06 58.9 553 21.0
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 3.9e-06 58.2 865 20.0
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 8.6e-06 57.0 558 20.4
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 8.6e-06 57.0 118 31.4


User provided reference genes

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