Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1962 Trochodendron aralioides HOM05D007361 ORTHO05D009239 3.0e-93 345.1 170 100.0
QL02p030053 Quercus lobata HOM05D007361 ORTHO05D009239 1.8e-53 213.0 174 66.7
Potri.001G089500 Populus trichocarpa HOM05D007361 ORTHO05D009239 1.8e-50 203.0 177 61.0
Manes.01G052200 Manihot esculenta HOM05D007361 ORTHO05D009239 9.5e-47 190.7 174 58.0
Nn1g00257 Nelumbo nucifera HOM05D007361 ORTHO05D009239 6.2e-46 188.0 159 62.9
Duzib205G2046 Durio zibethinus HOM05D007361 ORTHO05D009239 1.7e-43 179.9 174 56.3
Cpa.g.sc634.2 Carica papaya HOM05D007361 ORTHO05D009239 6.4e-43 177.9 107 80.4
TWI60G0282 Tripterygium wilfordii HOM05D007361 ORTHO05D009239 1.4e-42 176.8 148 62.8
Sabra01G0065600 Salix brachista HOM05D007361 ORTHO05D009239 4.1e-42 175.3 164 57.9
Gohir.A12G237900 Gossypium hirsutum HOM05D007361 ORTHO05D009239 9.2e-42 174.1 172 58.7
Aqoxy5G04283 Aquilegia oxysepala HOM05D007361 ORTHO05D009239 3.5e-41 172.2 181 54.7
GSVIVG01019560001 Vitis vinifera HOM05D007361 ORTHO05D009239 3.5e-41 172.2 153 61.4
Dinv37514 Davidia involucrata HOM05D007361 ORTHO05D009239 6.0e-41 171.4 148 64.9
PSO782G1801 Papaver somniferum HOM05D007361 ORTHO05D009239 7.8e-41 171.0 132 65.2
Gorai.008G256100 Gossypium raimondii HOM05D007361 ORTHO05D009239 1.7e-40 169.9 171 57.3
Prupe.5G122800 Prunus persica HOM05D007361 ORTHO05D009239 2.3e-40 169.5 149 59.1
Thecc.03G300700 Theobroma cacao HOM05D007361 ORTHO05D009239 3.9e-40 168.7 167 55.7
Haze_09090 Corylus avellana HOM05D007361 ORTHO05D009239 8.6e-40 167.5 147 57.8
CiPaw.12G081300 Carya illinoinensis HOM05D007361 ORTHO05D009239 1.5e-39 166.8 155 60.0
TWI81G0394 Tripterygium wilfordii HOM05D007361 ORTHO05D009239 2.5e-39 166.0 150 56.7
Atru.chr9.1927 Acer truncatum HOM05D001889 ORTHO05D009239 3.6e-38 162.2 171 49.7
Gohir.D12G239000 Gossypium hirsutum HOM05D007361 ORTHO05D009239 8.1e-38 161.0 160 55.6
PGR031G2691 Punica granatum HOM05D007361 ORTHO05D009239 8.1e-38 161.0 143 60.8
Potri.003G141700 Populus trichocarpa HOM05D007361 ORTHO05D009239 1.2e-36 157.1 159 52.8
Ciclev10024054m.g Citrus clementina HOM05D007361 ORTHO05D009239 7.5e-36 154.5 113 66.4
Lj4g0006418 Lotus japonicus HOM05D007361 ORTHO05D009239 9.8e-36 154.1 171 53.2
Sc01g0010390 Simmondsia chinensis HOM05D007361 ORTHO05D009239 9.8e-36 154.1 107 64.5
MSTRG.1799 Avicennia marina HOM05D007361 ORTHO05D009239 1.7e-35 153.3 175 50.3
Cc08_g16280 Coffea canephora HOM05D007361 ORTHO05D009239 6.4e-35 151.4 93 73.1
Actinidia22174 Actinidia chinensis HOM05D005144 ORTHO05D006112 1.9e-34 149.8 105 69.5
Peaxi162Scf00074g00624 Petunia axillaris HOM05D007361 ORTHO05D009239 4.1e-34 148.7 175 49.1
AUR62019861 Chenopodium quinoa HOM05D007361 ORTHO05D009239 5.4e-34 148.3 104 66.3
HPP92_002926 Vanilla planifolia HOM05D007361 ORTHO05D009239 9.2e-34 147.5 168 51.2
MELO3C016276.2 Cucumis melo HOM05D007361 ORTHO05D009239 2.1e-33 146.4 108 65.7
Sed0017120 Sechium edule HOM05D007361 ORTHO05D009239 4.6e-33 145.2 109 65.1
Nitab4.5_0000798g0080 Nicotiana tabacum HOM05D007361 ORTHO05D009239 6.0e-33 144.8 183 49.2
ATR0602G025 Amborella trichopoda HOM05D007361 ORTHO05D009239 1.0e-32 144.1 189 47.1
Phvul.002G299900 Phaseolus vulgaris HOM05D007361 ORTHO05D009239 1.3e-32 143.7 132 59.1
CANSAT21G1668 Cannabis sativa HOM05D007361 ORTHO05D009239 1.7e-32 143.3 84 76.2
CDE10G0162 Ceratophyllum demersum HOM05D007361 ORTHO05D009239 2.3e-32 142.9 173 48.6
Lalb_Chr09g0332251 Lupinus albus HOM05D007361 ORTHO05D009239 3.0e-32 142.5 166 51.2
CsaV3_4G006730 Cucumis sativus L. HOM05D007361 ORTHO05D009239 6.6e-32 141.4 105 63.8
ClCG07G011490 Citrullus lanatus HOM05D007361 ORTHO05D009239 8.6e-32 141.0 107 65.4
arahy.Tifrunner.gnm1.ann1.F7VJVA Arachis hypogaea HOM05D007361 ORTHO05D009239 1.1e-31 140.6 166 50.6
ECA246G3595 Erigeron canadensis HOM05D007361 ORTHO05D009239 1.1e-31 140.6 115 60.0
RcHm_v2.0_Chr7g0194141 Rosa chinensis HOM05D007361 ORTHO05D009239 1.5e-31 140.2 146 51.4
arahy.Tifrunner.gnm1.ann1.LM2PGP Arachis hypogaea HOM05D007361 ORTHO05D009239 2.5e-31 139.4 187 47.1
Glyma.05G218000 Glycine max HOM05D007361 ORTHO05D009239 2.5e-31 139.4 109 63.3
SEGI_33878 Sequoiadendron giganteum HOM05D007361 ORTHO05D009239 2.5e-31 139.4 100 68.0
THA.LOC104817582 Tarenaya hassleriana HOM05D007361 ORTHO05D009239 2.5e-31 139.4 165 50.3
Hund14207 Selenicereus undatus HOM05D007361 ORTHO05D009239 3.3e-31 139.0 132 55.3
CDE10G0255 Ceratophyllum demersum HOM05D007361 ORTHO05D009239 4.3e-31 138.7 92 70.7
Actinidia27311 Actinidia chinensis HOM05D007361 ORTHO05D009239 5.6e-31 138.3 69 87.0
Solyc08g082570.4 Solanum lycopersicum HOM05D007361 ORTHO05D009239 5.6e-31 138.3 126 56.3
Medtr8g099615 Medicago truncatula HOM05D007361 ORTHO05D009239 7.3e-31 137.9 166 47.6
Psat7g024200 Pisum sativum HOM05D007361 ORTHO05D009239 7.3e-31 137.9 137 48.9
Ca_17469_v3 Cicer arietinum L. HOM05D007361 ORTHO05D009239 9.5e-31 137.5 130 55.4
Eucgr.D01759 Eucalyptus grandis HOM05D007361 ORTHO05D009239 9.5e-31 137.5 66 90.9
TPR.G3427 Trifolium pratense HOM05D007361 ORTHO05D009239 1.2e-30 137.1 170 45.9
Ah.12g052700 Amaranthus hybridus HOM05D007361 ORTHO05D009239 2.1e-30 136.3 85 72.9
Os01g0235100 Oryza sativa ssp. japonica HOM05D007361 ORTHO05D009239 3.6e-30 135.6 96 64.6
PGSC0003DMG400012265 Solanum tuberosum HOM05D007361 ORTHO05D009239 4.7e-30 135.2 95 68.4
CSS0025387 Camellia sinensis var. sinensis HOM05D007361 ORTHO05D009239 6.2e-30 134.8 153 52.3
Sopen08g030820 Solanum pennellii HOM05D007361 ORTHO05D009239 6.2e-30 134.8 100 65.0
Migut.E01281 Erythranthe guttata HOM05D007361 ORTHO05D009239 8.1e-30 134.4 152 50.0
BolC4t26525H Brassica oleracea HOM05D000331 ORTHO05D000732 1.1e-29 134.0 95 64.2
Carub.0007s3327 Capsella rubella HOM05D007361 ORTHO05D009239 1.1e-29 134.0 158 48.7
HanXRQChr17g0534961 Helianthus annuus HOM05D007361 ORTHO05D009239 1.1e-29 134.0 111 60.4
Lj2C163G16 Lonicera japonica HOM05D005144 ORTHO05D006112 1.1e-29 134.0 81 75.3
Sabra03G0102300 Salix brachista HOM05D007361 ORTHO05D009239 1.1e-29 134.0 66 87.9
A07p21120 Brassica napus HOM05D007361 ORTHO05D009239 3.1e-29 132.5 98 62.2
BraA07t29798Z Brassica rapa HOM05D007361 ORTHO05D009239 3.1e-29 132.5 98 62.2
SalBow8G1606 Salvia bowleyana HOM05D007361 ORTHO05D009239 3.1e-29 132.5 99 63.6
Thhalv10026457m.g Eutrema salsugineum HOM05D007361 ORTHO05D009239 5.2e-29 131.7 95 64.2
FAN18G2902 Fragaria x ananassa HOM05D007361 ORTHO05D009239 6.8e-29 131.3 82 69.5
vmacro11341 Vaccinium macrocarpon HOM05D007361 ORTHO05D009239 6.8e-29 131.3 82 75.6
Nitab4.5_0008496g0040 Nicotiana tabacum HOM05D007361 ORTHO05D009239 8.9e-29 131.0 90 70.0
BcaC08g44581 Brassica carinata HOM05D007361 ORTHO05D009239 1.2e-28 130.6 92 64.1
C06p20480 Brassica napus HOM05D007361 ORTHO05D009239 1.2e-28 130.6 92 64.1
BolC6t37229H Brassica oleracea HOM05D000331 ORTHO05D000732 1.2e-28 130.6 92 64.1
DCAR_006523 Daucus carota HOM05D007361 ORTHO05D009239 1.2e-28 130.6 99 64.6
FvH4_5g04930 Fragaria vesca HOM05D007361 ORTHO05D009239 1.2e-28 130.6 71 78.9
FAN13G1516 Fragaria x ananassa HOM05D007361 ORTHO05D009239 1.2e-28 130.6 71 78.9
FAN18G1776 Fragaria x ananassa HOM05D007361 ORTHO05D009239 1.2e-28 130.6 71 78.9
Glyma.08G024100 Glycine max HOM05D007361 ORTHO05D009239 1.5e-28 130.2 115 58.3
BcaB02g07865 Brassica carinata HOM05D007361 ORTHO05D009239 2.0e-28 129.8 92 64.1
BcaC02g08893 Brassica carinata HOM05D007361 ORTHO05D009239 2.0e-28 129.8 95 63.2
C04p49390 Brassica napus HOM05D007361 ORTHO05D009239 2.0e-28 129.8 95 63.2
SGA_v2.0_scaffold111G31398 Striga asiatica HOM05D007361 ORTHO05D009239 2.0e-28 129.8 77 72.7
AT5G42070 Arabidopsis thaliana HOM05D007361 ORTHO05D009239 2.6e-28 129.4 132 50.8
CARHR212500 Cardamine hirsuta HOM05D007361 ORTHO05D009239 2.6e-28 129.4 159 46.5
Sp7g00060 Schrenkiella parvula HOM05D007361 ORTHO05D009239 4.4e-28 128.6 97 59.8
CAN.G567.14 Capsicum annuum HOM05D007361 ORTHO05D009239 5.8e-28 128.3 96 63.5
EL10Ac5g12938 Beta vulgaris HOM05D007361 ORTHO05D009239 1.3e-27 127.1 91 64.8
AagrBONN_evm.TU.Sc2ySwM_362.1194 Anthoceros agrestis HOM05D007361 ORTHO05D009239 2.2e-27 126.3 90 64.4
Aa31LG9G130 Aethionema arabicum HOM05D007361 ORTHO05D009239 3.8e-27 125.6 92 68.5
Rhsim02G0246000 Rhododendron simsii HOM05D007361 ORTHO05D009239 4.9e-27 125.2 85 69.4
Mapoly0039s0013 Marchantia polymorpha HOM05D007361 ORTHO05D009239 1.9e-26 123.2 79 73.4
unitig_0.g323 Utricularia gibba HOM05D007361 ORTHO05D009239 1.2e-25 120.6 77 67.5
A04p15160 Brassica napus HOM05D007361 ORTHO05D009239 7.8e-25 117.9 71 73.2
SMO340G0222 Selaginella moellendorffii HOM05D007361 ORTHO05D009239 1.3e-24 117.1 80 67.5
Pp3c20_23090 Physcomitrium patens HOM05D007361 ORTHO05D009239 4.7e-22 108.6 125 45.6
Lsat_1_v5_gn_3_11260 Lactuca sativa HOM05D007361 ORTHO05D009239 1.2e-20 104.0 93 57.0
CBR_g8730 Chara braunii HOM05D003343 ORTHO05D003787 9.9e-20 100.9 69 60.9
MCO14G090 Micromonas commoda HOM05D007361 ORTHO05D009239 6.2e-14 81.6 97 42.3
Cre02.g074100 Chlamydomonas reinhardtii HOM05D007361 ORTHO05D009239 1.4e-13 80.5 84 42.9
MBI06_g44793_MAGBIO Magnolia biondii HOM05D007361 ORTHO05D009239 5.3e-13 78.6 122 46.7
PRCOL_00001131 Prasinoderma coloniale HOM05D007361 ORTHO05D009239 8.7e-08 61.2 49 49.0


User provided reference genes

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