Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 3.6e-143 511.5 251 100.0
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 6.8e-134 480.7 237 99.2
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 3.6e-127 458.4 249 88.8
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 3.2e-107 392.1 254 78.0
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 1.0e-105 387.1 254 75.2
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 2.3e-105 386.0 252 78.2
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 1.2e-103 380.2 237 79.7
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 1.6e-103 379.8 245 78.0
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.6e-103 379.8 250 75.2
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 4.0e-102 375.2 236 80.1
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 1.5e-101 373.2 253 75.5
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 2.0e-101 372.9 242 78.5
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 9.9e-101 370.5 251 72.9
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 1.7e-100 369.8 254 74.4
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 2.9e-100 369.0 241 77.6
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 6.4e-100 367.9 253 73.9
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 8.4e-100 367.5 244 74.6
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 1.1e-99 367.1 235 77.4
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 1.4e-99 366.7 248 74.2
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 1.9e-99 366.3 248 74.2
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 2.4e-99 365.9 248 73.8
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 5.4e-99 364.8 238 76.1
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 2.7e-98 362.5 240 76.7
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 3.5e-98 362.1 252 73.0
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 1.0e-97 360.5 239 75.7
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 2.3e-97 359.4 246 74.8
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 3.9e-97 358.6 251 72.1
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 6.6e-97 357.8 253 72.3
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 8.7e-97 357.5 242 74.0
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 1.1e-96 357.1 249 71.5
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 5.6e-96 354.8 284 65.1
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 9.6e-96 354.0 276 67.8
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.3e-95 353.6 248 72.6
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 4.8e-95 351.7 237 72.2
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 6.2e-95 351.3 248 71.0
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 3.1e-94 349.0 276 66.7
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 4.0e-94 348.6 239 73.2
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 6.9e-94 347.8 239 74.1
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 1.2e-93 347.1 238 73.9
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.0e-93 346.3 238 74.4
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.0e-93 346.3 238 73.1
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 4.4e-93 345.1 248 70.2
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.1e-91 340.5 255 67.8
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 1.9e-91 339.7 249 69.9
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 4.2e-91 338.6 275 65.1
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 5.4e-91 338.2 276 65.6
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 9.3e-91 337.4 255 67.1
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 4.6e-90 335.1 249 68.7
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.0e-89 334.0 275 64.4
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 8.7e-89 330.9 249 68.7
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 8.7e-89 330.9 245 68.6
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 1.5e-88 330.1 238 69.3
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 2.5e-88 329.3 234 71.4
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 2.5e-88 329.3 234 71.4
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 2.5e-88 329.3 249 68.3
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 3.3e-88 328.9 242 68.6
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 5.6e-88 328.2 254 68.1
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 1.3e-87 327.0 249 67.9
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 1.6e-87 326.6 273 63.0
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 2.1e-87 326.2 245 68.6
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 2.1e-87 326.2 245 70.6
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 2.8e-87 325.9 239 68.6
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 6.2e-87 324.7 245 68.2
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 4.0e-86 322.0 258 65.1
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 6.9e-86 321.2 256 63.7
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 6.9e-86 321.2 240 69.6
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 6.9e-86 321.2 248 65.7
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 1.5e-85 320.1 244 67.6
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 3.4e-85 318.9 248 64.1
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 5.8e-85 318.2 256 62.9
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 7.6e-85 317.8 248 64.9
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 7.6e-85 317.8 248 64.9
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 9.9e-85 317.4 242 66.1
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 1.7e-84 316.6 248 63.7
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 1.7e-84 316.6 241 65.1
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 2.9e-84 315.8 242 65.3
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 4.9e-84 315.1 239 63.6
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 6.4e-84 314.7 228 71.1
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 1.1e-83 313.9 242 65.3
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 1.1e-83 313.9 242 65.3
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 5.4e-83 311.6 271 59.8
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 7.1e-83 311.2 248 64.1
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 7.1e-83 311.2 211 73.5
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 4.6e-82 308.5 271 60.9
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 7.9e-82 307.8 237 65.0
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 1.3e-81 307.0 242 65.3
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.3e-81 307.0 238 66.0
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 3.0e-81 305.8 231 67.1
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 2.5e-80 302.8 279 55.9
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 7.4e-80 301.2 240 65.4
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 2.4e-78 296.2 275 55.6
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 5.3e-78 295.0 232 61.2
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 3.8e-76 288.9 244 58.2
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 3.8e-76 288.9 230 65.2
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 1.4e-70 270.4 248 62.5
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 7.6e-69 264.6 254 55.5
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 1.2e-66 257.3 188 69.7
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 4.1e-62 242.3 173 71.7
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 1.4e-57 227.3 220 55.0
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 2.0e-53 213.4 256 45.3
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 5.5e-51 205.3 255 52.2
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 9.4e-51 204.5 256 44.1
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 2.1e-50 203.4 128 74.2
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 1.2e-45 187.6 253 47.0
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 1.2e-45 187.6 124 71.0
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 5.2e-41 172.2 180 47.8
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 7.5e-40 168.3 254 40.9
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 1.0e-36 157.9 121 59.5
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 9.1e-30 134.8 149 56.4
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 1.0e-28 131.3 120 58.3
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 4.5e-21 105.9 105 61.0
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 1.7e-20 104.0 123 51.2
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 2.9e-20 103.2 139 38.1
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 1.0e-09 68.2 43 69.8
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.2e-08 64.7 38 81.6
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.7e-07 59.7 43 60.5
Actinidia36204 Actinidia chinensis HOM05D006878 ORTHO05D008579 1.9e-06 57.4 78 48.7
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 7.0e-06 55.5 133 35.3


User provided reference genes

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