Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1800 Trochodendron aralioides HOM05D001017 ORTHO05D415139 9.0e-30 132.9 65 100.0
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 5.1e-09 63.9 42 73.8
arahy.Tifrunner.gnm1.ann1.7M2AWM Arachis hypogaea HOM05D001017 ORTHO05D001025 1.9e-08 62.0 41 70.7
arahy.Tifrunner.gnm1.ann1.ELJ55T Arachis hypogaea HOM05D001017 ORTHO05D001025 1.9e-08 62.0 41 70.7
Psat1g109840 Pisum sativum HOM05D001017 ORTHO05D001025 1.9e-08 62.0 41 73.2
CANSAT80G1984 Cannabis sativa HOM05D001017 ORTHO05D001025 2.5e-08 61.6 41 73.2
Glyma.09G153900 Glycine max HOM05D001017 ORTHO05D001025 2.5e-08 61.6 41 70.7
Glyma.16G204600 Glycine max HOM05D001017 ORTHO05D001025 2.5e-08 61.6 41 70.7
Medtr6g060570 Medicago truncatula HOM05D001017 ORTHO05D001025 2.5e-08 61.6 41 70.7
TWI39G0049 Tripterygium wilfordii HOM05D001017 ORTHO05D001025 2.5e-08 61.6 41 70.7
TAR375G0781 Trochodendron aralioides HOM05D001017 ORTHO05D001025 2.5e-08 61.6 41 73.2
CANSAT56G2919 Cannabis sativa HOM05D001017 ORTHO05D001025 4.3e-08 60.8 41 70.7
CANSAT56G4362 Cannabis sativa HOM05D001017 ORTHO05D001025 4.3e-08 60.8 41 70.7
Lj2g0007326 Lotus japonicus HOM05D001017 ORTHO05D001025 4.3e-08 60.8 41 70.7
Prupe.2G281900 Prunus persica HOM05D001017 ORTHO05D001025 4.3e-08 60.8 41 70.7
CiPaw.04G062700 Carya illinoinensis HOM05D001017 ORTHO05D001025 5.7e-08 60.5 41 70.7
CSS0039585 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 70.7
CSS0045082 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 70.7
ECA232G2607 Erigeron canadensis HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 70.7
Gohir.A07G039200 Gossypium hirsutum HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 68.3
HanXRQChr16g0512701 Helianthus annuus HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 70.7
Hma1.2p1_0099F.1_g048930 Hydrangea macrophylla HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 70.7
Hund20469 Selenicereus undatus HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 70.7
TPR.G10652 Trifolium pratense HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 68.3
GSVIVG01018517001 Vitis vinifera HOM05D001017 ORTHO05D001025 7.4e-08 60.1 41 70.7
Nn1g01228 Nelumbo nucifera HOM05D001017 ORTHO05D001025 9.7e-08 59.7 41 70.7
Hund20471 Selenicereus undatus HOM05D001017 ORTHO05D001025 9.7e-08 59.7 41 68.3
Actinidia13555 Actinidia chinensis HOM05D001017 ORTHO05D001025 1.3e-07 59.3 41 65.9
Ca_25232_v3 Cicer arietinum L. HOM05D001017 ORTHO05D001025 1.3e-07 59.3 41 70.7
Dinv28536 Davidia involucrata HOM05D001017 ORTHO05D001025 1.3e-07 59.3 41 70.7
Duzib205G0673 Durio zibethinus HOM05D001017 ORTHO05D001025 1.3e-07 59.3 41 68.3
Gohir.D07G043400 Gossypium hirsutum HOM05D001017 ORTHO05D001025 1.3e-07 59.3 41 68.3
Gorai.001G046400 Gossypium raimondii HOM05D001017 ORTHO05D001025 1.3e-07 59.3 41 68.3
Rhsim03G0171300 Rhododendron simsii HOM05D001017 ORTHO05D001025 1.3e-07 59.3 41 68.3
vmacro06768 Vaccinium macrocarpon HOM05D001017 ORTHO05D001025 1.3e-07 59.3 41 68.3
FAN01G1893 Fragaria x ananassa HOM05D001017 ORTHO05D001025 1.6e-07 58.9 41 68.3
MBI04_g35279_MAGBIO Magnolia biondii HOM05D001017 ORTHO05D001025 1.6e-07 58.9 41 70.7
MD01G1185500 Malus domestica HOM05D001017 ORTHO05D001025 1.6e-07 58.9 41 68.3
FvH4_7g28150 Fragaria vesca HOM05D001017 ORTHO05D001025 2.2e-07 58.5 41 68.3
FAN06G2121 Fragaria x ananassa HOM05D001017 ORTHO05D001025 2.2e-07 58.5 41 68.3
FAN06G4217 Fragaria x ananassa HOM05D001017 ORTHO05D001025 2.2e-07 58.5 41 68.3
FAN10G2671 Fragaria x ananassa HOM05D001017 ORTHO05D001025 2.2e-07 58.5 41 68.3
Psat3g036800 Pisum sativum HOM05D001017 ORTHO05D001025 2.2e-07 58.5 41 68.3
RcHm_v2.0_Chr1g0375091 Rosa chinensis HOM05D001017 ORTHO05D001025 2.2e-07 58.5 41 68.3
Cpa.g.sc3.274 Carica papaya HOM05D001017 ORTHO05D001025 2.8e-07 58.2 41 68.3
CiPaw.10G004800 Carya illinoinensis HOM05D001017 ORTHO05D001025 2.8e-07 58.2 41 68.3
CDE09G0444 Ceratophyllum demersum HOM05D001017 ORTHO05D001025 2.8e-07 58.2 41 68.3
Lsat_1_v5_gn_2_129481 Lactuca sativa HOM05D001017 ORTHO05D001025 2.8e-07 58.2 41 68.3
Os03g0248600 Oryza sativa ssp. japonica HOM05D001017 ORTHO05D001025 2.8e-07 58.2 41 68.3
Phvul.004G127500 Phaseolus vulgaris HOM05D001017 ORTHO05D001025 2.8e-07 58.2 41 68.3
Sp5g09370 Schrenkiella parvula HOM05D001017 ORTHO05D001025 2.8e-07 58.2 41 68.3
Lalb_Chr03g0033121 Lupinus albus HOM05D001017 ORTHO05D001025 3.7e-07 57.8 41 65.9
Lalb_Chr19g0131331 Lupinus albus HOM05D001017 ORTHO05D001025 3.7e-07 57.8 41 65.9
TPR.G28360 Trifolium pratense HOM05D001017 ORTHO05D001025 3.7e-07 57.8 41 68.3
TPR.G35255 Trifolium pratense HOM05D001017 ORTHO05D001025 3.7e-07 57.8 41 68.3
Atru.chr1.638 Acer truncatum HOM05D001017 ORTHO05D001025 6.3e-07 57.0 41 65.9
Atru.chr8.1645 Acer truncatum HOM05D001017 ORTHO05D001025 6.3e-07 57.0 41 65.9
Ah.15g091140 Amaranthus hybridus HOM05D001017 ORTHO05D001025 6.3e-07 57.0 41 63.4
COL.COLO4_14178 Corchorus olitorius HOM05D001017 ORTHO05D001025 6.3e-07 57.0 41 65.9
Sed0010426 Sechium edule HOM05D001017 ORTHO05D001025 6.3e-07 57.0 41 65.9
Sed0026371 Sechium edule HOM05D001017 ORTHO05D001025 6.3e-07 57.0 41 65.9
VMungo0464G1289 Vigna mungo HOM05D001017 ORTHO05D001025 6.3e-07 57.0 41 63.4
Ah.15g091130 Amaranthus hybridus HOM05D001017 ORTHO05D001025 8.2e-07 56.6 41 63.4
Haze_13827 Corylus avellana HOM05D001017 ORTHO05D001025 8.2e-07 56.6 41 63.4
Hma1.2p1_0084F.1_g043150 Hydrangea macrophylla HOM05D001017 ORTHO05D001025 8.2e-07 56.6 41 65.9
QL12p039638 Quercus lobata HOM05D001017 ORTHO05D001025 8.2e-07 56.6 41 63.4
Aqoxy7G00624 Aquilegia oxysepala HOM05D001017 ORTHO05D001025 1.1e-06 56.2 41 65.9
EL10Ac7g17000 Beta vulgaris HOM05D001017 ORTHO05D001025 1.1e-06 56.2 41 63.4
Nn2g13984 Nelumbo nucifera HOM05D001017 ORTHO05D001025 1.1e-06 56.2 41 61.0
Nn6g35065 Nelumbo nucifera HOM05D001017 ORTHO05D001025 1.1e-06 56.2 41 65.9
Rhsim03G0081900 Rhododendron simsii HOM05D001017 ORTHO05D001025 1.1e-06 56.2 41 65.9
Thecc.03G161200 Theobroma cacao HOM05D001017 ORTHO05D001025 1.1e-06 56.2 41 65.9
HPP92_014950 Vanilla planifolia HOM05D001017 ORTHO05D001025 1.1e-06 56.2 41 65.9
HPP92_014979 Vanilla planifolia HOM05D001017 ORTHO05D001025 1.1e-06 56.2 41 65.9
ATR0810G114 Amborella trichopoda HOM05D001017 ORTHO05D001025 1.4e-06 55.8 41 63.4
Medtr7g103620 Medicago truncatula HOM05D001017 ORTHO05D001025 1.4e-06 55.8 41 65.9
Potri.015G131100 Populus trichocarpa HOM05D001017 ORTHO05D001025 1.4e-06 55.8 41 65.9
arahy.Tifrunner.gnm1.ann1.86EPEX Arachis hypogaea HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 65.9
arahy.Tifrunner.gnm1.ann1.AX840Y Arachis hypogaea HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 65.9
BcaC07g39657 Brassica carinata HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 65.9
C08p28200 Brassica napus HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 65.9
BolC8t50432H Brassica oleracea HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 65.9
AUR62033587 Chenopodium quinoa HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 63.4
AUR62037882 Chenopodium quinoa HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 63.4
Os06g0136600 Oryza sativa ssp. japonica HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 65.9
PSO339G3997 Papaver somniferum HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 63.4
PSO384G0146 Papaver somniferum HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 63.4
Sabra15G0144300 Salix brachista HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 63.4
THA.LOC104827486 Tarenaya hassleriana HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 65.9
Zm00001eb377870 Zea mays HOM05D001017 ORTHO05D001025 1.8e-06 55.5 41 61.0
Aqoxy2G01438 Aquilegia oxysepala HOM05D001017 ORTHO05D001025 2.4e-06 55.1 41 63.4
COL.COLO4_29824 Corchorus olitorius HOM05D001017 ORTHO05D001025 2.4e-06 55.1 41 65.9
PGR004G2140 Punica granatum HOM05D001017 ORTHO05D001025 2.4e-06 55.1 41 63.4
Sc02g0001170 Simmondsia chinensis HOM05D001017 ORTHO05D001025 2.4e-06 55.1 41 63.4
Zm00001eb026940 Zea mays HOM05D001017 ORTHO05D001025 2.4e-06 55.1 41 63.4
Aa31LG5G21750 Aethionema arabicum HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
AL4G32710 Arabidopsis lyrata HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
AT2G36530 Arabidopsis thaliana HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BcaB01g03831 Brassica carinata HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BcaB02g09348 Brassica carinata HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BcaB06g28950 Brassica carinata HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BcaC02g07586 Brassica carinata HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BcaC02g11771 Brassica carinata HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
A03p20180 Brassica napus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
A04p28030 Brassica napus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
A05p09270 Brassica napus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
C03p23630 Brassica napus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
C04p11570 Brassica napus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
C04p65430 Brassica napus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BolC3t14758H Brassica oleracea HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BolC4t22805H Brassica oleracea HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BolC4t28032H Brassica oleracea HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BraA03t11268Z Brassica rapa HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BraA04t18290Z Brassica rapa HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
BraA05t19884Z Brassica rapa HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Carub.0004s1833 Capsella rubella HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
CARHR130820 Cardamine hirsuta HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
CARHR162840 Cardamine hirsuta HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
ClCG04G009740 Citrullus lanatus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 61.0
Duzib093G1966 Durio zibethinus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Duzib106G0355 Durio zibethinus HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Thhalv10010378m.g Eutrema salsugineum HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Thhalv10010379m.g Eutrema salsugineum HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Gohir.A01G209600 Gossypium hirsutum HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Gohir.D01G198700 Gossypium hirsutum HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Gohir.D09G137900 Gossypium hirsutum HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Gorai.002G243100 Gossypium raimondii HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Gorai.006G158500 Gossypium raimondii HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
Nitab4.5_0000132g0250 Nicotiana tabacum HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 63.4
Nitab4.5_0005504g0040 Nicotiana tabacum HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 63.4
Sp4g18820 Schrenkiella parvula HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
TWI77G0014 Tripterygium wilfordii HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 65.9
TAR369G0241 Trochodendron aralioides HOM05D001017 ORTHO05D001025 3.1e-06 54.7 41 63.4
MSTRG.19225 Avicennia marina HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 65.9
CSS0021646 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 65.9
Haze_19529 Corylus avellana HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 63.4
CsaV3_6G040390 Cucumis sativus L. HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 61.0
Dinv19820 Davidia involucrata HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 65.9
MBI17_g30590_MAGBIO Magnolia biondii HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 63.4
Phvul.001G186100 Phaseolus vulgaris HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 63.4
Pp3c3_3140 Physcomitrium patens HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 61.0
SalBow3G2455 Salvia bowleyana HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 63.4
THA.LOC104805113 Tarenaya hassleriana HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 65.9
VMungo1383G1262 Vigna mungo HOM05D001017 ORTHO05D001025 4.1e-06 54.3 41 63.4
Cc06_g05150 Coffea canephora HOM05D001017 ORTHO05D001025 5.3e-06 53.9 41 63.4
DCAR_020782 Daucus carota HOM05D001017 ORTHO05D001025 5.3e-06 53.9 41 65.9
Os10g0167300 Oryza sativa ssp. japonica HOM05D001017 ORTHO05D001025 5.3e-06 53.9 41 58.5
PSO478G2722 Papaver somniferum HOM05D001017 ORTHO05D001025 5.3e-06 53.9 41 63.4
PSO782G5736 Papaver somniferum HOM05D001017 ORTHO05D001025 5.3e-06 53.9 41 63.4
Prupe.7G118700 Prunus persica HOM05D001017 ORTHO05D001025 5.3e-06 53.9 41 63.4
SHI12235 Sapria himalayana HOM05D001017 ORTHO05D001025 5.3e-06 53.9 41 65.9
SGA_v2.0_scaffold75G24800 Striga asiatica HOM05D001017 ORTHO05D001025 5.3e-06 53.9 41 63.4
Carub.0005s1944 Capsella rubella HOM05D001017 ORTHO05D001025 6.9e-06 53.5 41 63.4
Ciclev10004965m.g Citrus clementina HOM05D001017 ORTHO05D001025 6.9e-06 53.5 41 61.0
DCAR_020781 Daucus carota HOM05D001017 ORTHO05D001025 6.9e-06 53.5 41 63.4
Glyma.03G190500 Glycine max HOM05D001017 ORTHO05D001025 6.9e-06 53.5 41 61.0
Lalb_Chr01g0018351 Lupinus albus HOM05D001017 ORTHO05D001025 6.9e-06 53.5 41 63.4
Lalb_Chr20g0112241 Lupinus albus HOM05D001017 ORTHO05D001025 6.9e-06 53.5 41 63.4
PGSC0003DMG402002721 Solanum tuberosum HOM05D001017 ORTHO05D001025 6.9e-06 53.5 41 63.4
unitig_22.g5115 Utricularia gibba HOM05D001017 ORTHO05D001025 6.9e-06 53.5 41 63.4
CAN.G824.32 Capsicum annuum HOM05D001017 ORTHO05D001025 9.0e-06 53.1 41 61.0
Glyma.19G190900 Glycine max HOM05D001017 ORTHO05D001025 9.0e-06 53.1 41 61.0
HanXRQChr06g0181591 Helianthus annuus HOM05D001017 ORTHO05D001025 9.0e-06 53.1 41 63.4
Lsat_1_v5_gn_2_21500 Lactuca sativa HOM05D001017 ORTHO05D001025 9.0e-06 53.1 41 63.4
Peaxi162Scf00433g00096 Petunia axillaris HOM05D001017 ORTHO05D001025 9.0e-06 53.1 41 63.4
Pp3c3_3160 Physcomitrium patens HOM05D001017 ORTHO05D001025 9.0e-06 53.1 41 61.0
Solyc09g009020.3 Solanum lycopersicum HOM05D001017 ORTHO05D001025 9.0e-06 53.1 41 61.0
Sopen09g003760 Solanum pennellii HOM05D001017 ORTHO05D001025 9.0e-06 53.1 41 61.0


User provided reference genes

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