Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 0.0e+00 1236.9 686 100.0
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1075.5 687 84.7
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 0.0e+00 1075.5 687 84.7
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.9e-311 1072.0 686 86.3
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 3.3e-311 1071.2 666 86.8
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 5.1e-309 1063.9 666 86.5
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.7e-307 1057.7 687 83.6
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.4e-306 1055.8 670 85.5
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.4e-303 1045.8 678 85.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.5e-303 1045.0 686 83.8
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.5e-303 1045.0 684 83.2
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.2e-302 1042.7 686 84.1
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.6e-302 1040.8 682 84.5
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 2.3e-301 1038.5 688 83.1
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 8.8e-301 1036.6 669 86.1
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.5e-300 1035.0 682 84.2
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.7e-300 1033.1 678 83.9
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 4.8e-299 1030.8 686 81.9
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 8.2e-299 1030.0 687 84.0
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.8e-298 1028.9 688 82.4
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 3.4e-297 1024.6 657 84.5
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.9e-297 1023.8 687 82.1
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.8e-296 1021.1 686 81.3
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 5.0e-296 1020.8 687 81.7
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 6.5e-296 1020.4 686 81.2
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 3.2e-295 1018.1 689 82.9
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.0e-293 1013.1 684 82.5
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 3.9e-293 1011.1 675 81.0
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 3.9e-293 1011.1 681 83.3
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 3.9e-293 1011.1 682 80.9
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.0e-292 1008.8 683 80.7
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 7.4e-292 1006.9 689 81.1
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 9.7e-292 1006.5 691 81.8
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 9.7e-292 1006.5 688 81.5
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 1.7e-291 1005.7 686 81.0
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.2e-291 1005.4 747 74.7
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 2.8e-291 1005.0 691 79.7
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.8e-291 1005.0 747 74.7
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 3.7e-291 1004.6 687 80.8
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 3.1e-290 1001.5 689 79.0
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.6e-289 999.2 692 78.8
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 2.0e-289 998.8 684 79.8
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 2.2e-288 995.3 696 79.2
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.9e-288 995.0 690 80.3
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.1e-287 993.0 670 80.0
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.1e-287 993.0 690 79.3
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.1e-287 993.0 654 82.3
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.2e-286 989.6 686 80.8
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 1.6e-286 989.2 681 80.6
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.1e-286 988.8 686 81.2
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 6.1e-286 987.3 689 78.5
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 6.1e-286 987.3 682 79.0
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 6.1e-286 987.3 689 79.7
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 6.7e-285 983.8 675 81.2
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.1e-284 983.0 682 78.7
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 2.6e-284 981.9 700 79.9
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.7e-284 980.7 682 80.6
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.7e-284 980.7 682 78.6
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.8e-283 978.4 682 78.6
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 8.2e-283 976.9 688 77.2
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.4e-282 976.1 689 80.3
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 1.8e-282 975.7 694 79.8
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 2.0e-281 972.2 685 79.3
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 3.5e-281 971.5 689 77.2
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 5.9e-281 970.7 689 78.7
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 1.0e-280 969.9 695 77.4
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.3e-280 969.5 727 75.4
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.7e-280 969.1 689 78.5
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 5.0e-280 967.6 690 78.1
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 5.0e-280 967.6 693 77.3
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 4.2e-279 964.5 727 75.0
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 6.1e-278 960.7 690 76.8
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 6.8e-277 957.2 686 79.3
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.8e-275 951.0 731 73.3
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 1.1e-274 949.9 690 77.2
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 1.8e-274 949.1 688 77.6
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 3.1e-274 948.3 690 77.1
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 3.1e-274 948.3 684 77.5
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 2.7e-273 945.3 662 78.9
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 2.9e-272 941.8 686 77.0
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 8.5e-272 940.3 687 77.6
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 2.1e-270 935.6 657 78.4
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 4.7e-270 934.5 689 76.3
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 2.3e-269 932.2 688 77.0
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 2.3e-269 932.2 688 77.0
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 5.2e-269 931.0 687 76.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 2.0e-268 929.1 679 76.9
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.0e-268 929.1 637 81.6
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 1.3e-267 926.4 696 75.4
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.4e-266 922.9 685 74.3
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.8e-266 922.5 573 87.3
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 3.1e-266 921.8 687 77.1
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 5.4e-266 921.0 679 73.3
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 7.0e-266 920.6 691 74.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.2e-265 919.8 720 73.2
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.7e-265 918.7 669 76.2
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.1e-262 907.5 735 70.6
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 6.1e-262 907.5 694 76.1
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 3.0e-261 905.2 651 77.6
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 4.4e-260 901.4 608 82.9
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 2.2e-259 899.0 1036 54.6
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 6.4e-259 897.5 687 73.5
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.1e-258 896.7 622 80.5
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 3.5e-257 891.7 682 75.1
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.3e-256 889.8 687 73.2
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.5e-255 885.6 687 72.8
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.6e-255 884.4 683 73.5
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 7.3e-255 884.0 669 74.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.8e-252 873.6 721 69.3
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.3e-251 873.2 721 69.3
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 2.8e-246 855.5 656 74.2
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.5e-244 847.4 690 70.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 2.5e-223 779.2 713 66.1
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.7e-219 766.5 666 65.3
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 3.0e-216 755.7 551 78.0
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 4.8e-214 748.4 670 63.3
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-213 746.9 652 66.3
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 5.5e-210 734.9 654 63.5
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.9e-171 606.3 424 81.8
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.0e-168 597.8 678 53.7
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 8.2e-166 588.2 401 82.8
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 7.0e-157 558.5 370 80.8
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.0e-139 501.5 342 76.3
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 8.9e-136 488.4 570 54.7
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 3.3e-114 416.8 363 68.0
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 9.0e-96 355.5 501 48.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.7e-92 344.0 510 47.6
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 9.7e-82 308.9 721 33.8
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.3e-81 308.5 273 66.7
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.2e-55 222.2 774 31.1
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.2e-52 212.2 560 33.2
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 9.7e-50 202.6 129 79.8
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.8e-49 201.1 185 62.7
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.3e-49 199.9 156 66.7
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 4.2e-45 187.2 125 76.8
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.0e-39 168.3 94 89.4
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.5e-29 135.6 640 25.9
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 8.0e-28 129.8 91 79.1
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.3e-25 122.5 694 23.6
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.3e-17 95.9 71 71.8
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.4e-16 91.7 709 22.4
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.1e-13 82.8 66 68.2
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 8.1e-12 76.6 109 52.3
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 8.3e-09 66.6 54 68.5
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.7e-07 61.6 82 48.8
Nn3g17783 Nelumbo nucifera HOM05D004837 ORTHO05D005741 6.0e-07 60.5 61 57.4


User provided reference genes

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