Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 0.0e+00 1132.5 580 100.0
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 5.8e-221 771.2 533 73.2
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.7e-220 769.6 513 75.8
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 1.3e-201 706.8 536 70.0
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 5.1e-185 651.7 536 64.7
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.5e-184 650.2 533 64.4
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.7e-183 646.7 557 62.5
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.2e-183 646.4 537 63.3
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 4.5e-181 638.6 533 62.1
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.7e-178 629.4 532 62.2
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 4.7e-178 628.6 565 59.8
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 7.9e-178 627.9 534 61.8
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.4e-177 627.1 553 59.5
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.4e-177 627.1 537 62.6
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.3e-177 626.3 534 61.4
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 4.4e-176 622.1 533 62.1
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 9.7e-176 620.9 534 62.7
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 2.8e-175 619.4 532 60.9
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 4.8e-175 618.6 534 62.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 9.1e-174 614.4 533 60.4
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 3.5e-173 612.5 536 60.6
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.1e-171 607.4 535 60.7
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.9e-171 606.7 533 61.7
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 5.5e-171 605.1 533 61.9
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.2e-170 604.0 533 61.4
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 4.8e-167 592.0 536 59.5
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 4.8e-167 592.0 565 56.8
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 1.1e-166 590.9 534 57.9
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.1e-166 589.3 534 59.7
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 7.0e-166 588.2 536 59.1
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 5.0e-164 582.0 536 58.0
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.9e-163 580.1 537 58.7
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 9.4e-163 577.8 534 57.7
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 6.1e-162 575.1 520 60.6
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 1.4e-161 573.9 547 58.0
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 3.0e-161 572.8 538 58.0
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 6.8e-161 571.6 534 55.8
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 6.3e-159 565.1 535 57.2
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 8.3e-159 564.7 531 56.9
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.0e-156 557.8 531 56.1
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 4.2e-155 552.4 506 59.1
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.1e-154 550.1 540 55.0
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 3.6e-154 549.3 541 55.8
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 2.6e-152 543.1 442 65.4
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.7e-151 540.4 535 55.5
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 5.9e-149 531.9 535 55.7
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 2.3e-148 530.0 537 55.1
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 5.0e-148 528.9 541 54.7
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.5e-147 526.6 535 55.3
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.6e-146 523.9 559 53.0
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 4.7e-146 522.3 538 53.9
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 3.0e-145 519.6 539 52.7
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.8e-143 513.1 545 52.1
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 6.3e-143 511.9 543 52.1
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 6.3e-143 511.9 540 52.0
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 5.4e-142 508.8 541 52.3
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 7.0e-142 508.4 543 52.7
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.2e-142 508.1 547 52.7
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 9.2e-142 508.1 550 51.6
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 2.0e-141 506.9 540 52.8
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 5.9e-141 505.4 534 52.8
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.9e-141 505.4 547 52.5
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 5.9e-141 505.4 535 50.8
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.3e-140 504.2 547 52.5
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.9e-140 502.7 550 52.2
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.0e-140 502.3 549 51.7
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.3e-139 499.6 535 49.9
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 5.6e-139 498.8 538 51.1
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.4e-137 494.2 612 47.4
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.0e-137 492.7 564 50.7
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 4.0e-137 492.7 538 50.4
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.2e-136 491.1 538 49.3
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 5.8e-136 488.8 537 52.1
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 2.2e-135 486.9 680 45.4
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 3.7e-135 486.1 533 52.2
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.4e-134 484.2 517 52.2
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.9e-131 473.8 539 48.2
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.3e-131 473.0 535 51.0
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.1e-130 470.3 555 49.0
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 8.0e-130 468.4 548 48.2
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.1e-129 468.0 545 50.3
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.8e-129 467.2 536 48.9
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 2.3e-129 466.8 540 50.2
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 4.4e-128 462.6 539 50.3
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 7.5e-128 461.8 549 47.4
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 2.2e-127 460.3 532 49.8
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.7e-127 459.5 548 47.6
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.1e-125 453.8 547 47.2
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.3e-124 451.1 535 48.0
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 3.0e-124 449.9 556 48.7
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 8.6e-124 448.4 440 56.1
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 1.9e-123 447.2 534 48.1
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 8.1e-122 441.8 539 46.8
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 8.1e-122 441.8 539 46.8
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.8e-121 440.7 539 46.6
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 6.8e-121 438.7 387 60.5
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 8.9e-121 438.3 539 46.8
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 8.9e-121 438.3 539 46.6
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 3.4e-120 436.4 543 46.2
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 8.3e-119 431.8 533 46.2
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.1e-118 431.4 492 51.4
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.4e-118 431.0 552 46.7
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 5.4e-118 429.1 546 46.2
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 4.6e-117 426.0 539 45.3
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.0e-116 424.9 539 45.3
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.3e-116 424.5 386 59.6
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 6.6e-116 422.2 421 55.1
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 6.8e-113 412.1 560 43.0
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 4.4e-112 409.5 559 43.1
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.4e-110 403.7 531 45.4
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.3e-108 397.9 569 42.9
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.1e-107 394.8 472 50.0
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 4.0e-105 386.3 541 44.7
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 1.7e-103 380.9 332 60.8
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 5.4e-102 375.9 549 41.5
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.1e-101 374.0 539 43.2
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 3.3e-99 366.7 536 43.3
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 6.9e-97 359.0 341 58.4
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.4e-94 351.3 277 66.8
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 4.6e-85 319.7 400 48.8
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 3.9e-84 316.6 276 63.0
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 2.7e-77 293.9 220 68.2
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 4.6e-77 293.1 280 56.8
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.4e-68 265.0 499 37.7
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.1e-68 263.1 349 44.7
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.1e-67 261.9 448 38.2
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 3.1e-65 253.8 453 37.1
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.7e-63 248.1 262 50.0
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 5.9e-56 223.0 377 39.8
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 8.0e-53 212.6 155 63.2
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.3e-52 211.1 183 60.1
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.7e-45 186.8 335 38.2
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 1.5e-38 165.2 247 42.1
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 1.2e-35 155.6 154 51.3
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 1.5e-35 155.2 660 24.8
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 2.6e-35 154.5 154 51.9
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 5.7e-35 153.3 156 52.6
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 1.8e-33 148.3 183 43.7
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 3.1e-33 147.5 149 51.0
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 7.0e-33 146.4 175 48.6
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 6.6e-31 139.8 214 40.2
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 5.2e-28 130.2 544 24.6
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 6.8e-28 129.8 150 49.3
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.4e-25 122.1 141 46.8
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 4.3e-22 110.5 191 32.5
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.5e-16 90.9 286 28.7
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 3.3e-14 84.3 207 31.4
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 1.1e-09 69.3 98 37.8
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 1.3e-07 62.4 86 43.0
CAN.G142.9 Capsicum annuum HOM05D000388 ORTHO05D000473 1.5e-06 58.9 168 32.7
CAN.G432.4 Capsicum annuum HOM05D002050 ORTHO05D001949 2.5e-06 58.2 58 55.2


User provided reference genes

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