Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 5.2e-119 431.0 212 100.0
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 6.0e-91 337.8 208 80.3
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 2.3e-82 309.3 209 74.6
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 3.6e-80 302.0 210 74.3
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 9.9e-78 293.9 209 71.3
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 9.9e-78 293.9 242 64.0
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 2.2e-77 292.7 178 80.3
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 1.9e-76 289.7 209 69.9
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 1.9e-76 289.7 209 70.8
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 2.4e-76 289.3 201 70.1
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 2.7e-75 285.8 207 69.1
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 4.6e-75 285.0 210 71.0
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 6.0e-75 284.6 213 70.4
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 3.0e-74 282.3 209 66.5
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 3.9e-74 282.0 206 68.9
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 3.9e-74 282.0 207 68.1
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 6.7e-74 281.2 209 70.3
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 9.6e-73 277.3 158 80.4
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 9.6e-73 277.3 213 68.5
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 2.1e-72 276.2 213 65.7
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 2.8e-72 275.8 196 68.9
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 3.7e-72 275.4 206 67.0
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 3.7e-72 275.4 180 72.8
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 4.8e-72 275.0 202 69.3
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 4.8e-72 275.0 202 69.3
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 1.8e-71 273.1 181 73.5
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 2.4e-71 272.7 213 65.3
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 3.1e-71 272.3 173 74.0
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 3.1e-71 272.3 211 64.0
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 5.3e-71 271.6 191 69.6
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 5.3e-71 271.6 167 74.9
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 9.0e-71 270.8 166 75.9
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 9.0e-71 270.8 196 67.9
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 9.0e-71 270.8 196 67.9
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 1.2e-70 270.4 164 78.7
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 1.5e-70 270.0 157 78.3
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.0e-70 269.6 210 65.7
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 3.4e-70 268.9 167 74.3
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 3.4e-70 268.9 167 74.3
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 3.4e-70 268.9 167 74.3
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 5.8e-70 268.1 164 76.2
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 7.6e-70 267.7 173 71.7
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 1.3e-69 266.9 167 73.7
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 1.3e-69 266.9 167 73.7
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 1.7e-69 266.5 155 77.4
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 2.9e-69 265.8 195 65.6
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 2.9e-69 265.8 246 58.9
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 3.8e-69 265.4 193 67.4
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 3.8e-69 265.4 198 68.7
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 3.8e-69 265.4 209 65.1
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 6.5e-69 264.6 221 63.3
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 1.1e-68 263.8 203 66.5
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 1.4e-68 263.5 198 67.2
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 2.5e-68 262.7 167 73.1
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 4.2e-68 261.9 164 73.8
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 7.1e-68 261.2 208 62.0
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 1.2e-67 260.4 210 62.4
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 1.2e-67 260.4 207 66.2
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 2.7e-67 259.2 168 76.2
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 6.0e-67 258.1 184 70.1
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 6.0e-67 258.1 171 70.8
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 7.9e-67 257.7 205 65.4
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 1.3e-66 256.9 167 73.1
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 1.8e-66 256.5 213 63.8
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 5.1e-66 255.0 166 71.1
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 6.7e-66 254.6 156 76.9
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 1.5e-65 253.4 200 67.5
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 4.3e-65 251.9 163 75.5
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 9.6e-65 250.8 199 65.8
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.3e-64 250.4 201 63.2
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 1.3e-64 250.4 232 58.2
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 4.8e-64 248.4 209 59.3
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 8.2e-64 247.7 158 74.1
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 1.4e-63 246.9 202 62.9
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 3.1e-63 245.7 208 56.7
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 4.1e-63 245.4 168 69.0
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 9.0e-63 244.2 210 62.9
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 2.9e-61 239.2 195 61.5
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 2.9e-61 239.2 195 61.5
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 1.9e-60 236.5 217 57.6
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 3.2e-60 235.7 166 70.5
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 7.2e-60 234.6 225 55.6
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 2.3e-58 229.6 169 66.3
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 3.9e-58 228.8 187 61.0
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 4.3e-57 225.3 177 62.7
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 5.7e-57 224.9 179 63.1
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 2.8e-56 222.6 137 73.0
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 1.1e-55 220.7 182 59.9
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 1.8e-55 219.9 144 73.6
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 1.8e-55 219.9 139 72.7
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 6.9e-55 218.0 159 64.8
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 9.4e-52 207.6 208 52.4
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 9.7e-49 197.6 235 47.7
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 8.2e-48 194.5 125 72.0
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 1.1e-47 194.1 161 57.8
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.4e-42 177.2 196 50.5
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 3.0e-42 176.0 217 49.8
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 3.0e-42 176.0 100 81.0
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 8.8e-34 147.9 133 57.1
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 4.4e-33 145.6 157 47.1
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 1.8e-31 140.2 75 82.7
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 4.1e-31 139.0 132 56.1
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 9.1e-31 137.9 124 57.3
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 2.7e-30 136.3 92 72.8
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 7.7e-30 134.8 76 80.3
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 1.5e-28 130.6 74 81.1
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 2.1e-27 126.7 111 64.9
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 1.0e-26 124.4 128 45.3
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.4e-15 87.4 66 63.6
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 7.0e-15 85.1 58 67.2
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 2.5e-12 76.6 43 79.1
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 5.7e-09 65.5 76 46.1
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 5.7e-09 65.5 44 63.6
QL06p007766 Quercus lobata HOM05D006526 ORTHO05D008496 7.0e-07 58.5 41 65.9
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 4.6e-06 55.8 32 81.2


User provided reference genes

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