Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.7e-247 859.0 471 100.0
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 2.5e-169 599.4 467 75.2
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 4.2e-169 598.6 462 75.1
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 7.2e-161 571.2 468 70.3
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.1e-160 569.7 465 71.8
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 3.9e-159 565.5 471 71.1
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 5.1e-159 565.1 471 71.1
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 5.1e-159 565.1 471 70.9
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.4e-156 557.0 457 72.2
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.4e-156 557.0 471 70.3
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 6.5e-154 548.1 476 68.5
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 1.9e-153 546.6 468 67.9
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 7.2e-153 544.7 473 68.9
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.2e-152 543.9 468 69.4
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.6e-152 543.5 471 69.2
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 4.7e-152 542.0 465 70.5
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 4.4e-150 535.4 471 68.4
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 5.7e-150 535.0 468 69.4
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 2.2e-149 533.1 470 68.1
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 3.1e-148 529.3 466 70.4
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 5.3e-148 528.5 471 68.2
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 8.5e-146 521.2 471 66.7
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.4e-145 520.4 471 67.1
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 2.5e-145 519.6 471 66.5
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.5e-145 519.6 471 65.6
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 3.2e-145 519.2 469 67.4
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.5e-145 518.5 471 66.2
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 3.6e-144 515.8 470 66.6
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 3.7e-141 505.8 468 66.7
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.8e-140 503.4 465 67.1
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 9.1e-140 501.1 394 75.6
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 2.0e-139 500.0 465 66.9
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 8.5e-138 494.6 474 63.5
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.1e-137 494.2 462 65.8
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.1e-137 494.2 465 66.2
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.5e-137 493.8 444 67.6
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 3.2e-137 492.7 468 65.2
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 2.7e-136 489.6 458 63.1
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 8.0e-136 488.0 505 59.2
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 2.3e-135 486.5 445 65.2
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.8e-133 478.8 469 64.0
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 8.2e-133 478.0 459 64.1
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 5.3e-132 475.3 457 64.8
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 5.3e-132 475.3 459 63.4
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 7.2e-129 464.9 449 64.8
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.2e-128 464.2 468 60.7
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.2e-128 464.2 453 63.8
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 2.1e-128 463.4 449 64.1
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 2.7e-128 463.0 466 60.3
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 3.6e-128 462.6 468 62.4
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 8.0e-128 461.5 443 63.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 5.2e-127 458.8 443 63.2
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.5e-126 457.2 442 63.1
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.5e-126 457.2 440 63.2
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 2.0e-126 456.8 507 58.8
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 2.0e-126 456.8 443 63.2
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 3.4e-126 456.1 443 63.4
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 3.4e-126 456.1 464 60.8
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 3.7e-125 452.6 449 62.6
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 4.8e-125 452.2 457 61.7
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.4e-124 450.7 461 59.0
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.8e-124 450.3 415 66.7
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.6e-123 447.2 354 75.1
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.1e-121 441.0 468 59.2
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 2.5e-121 439.9 451 61.4
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 3.3e-121 439.5 468 60.3
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.6e-120 437.2 441 62.4
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.8e-116 423.7 461 60.1
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 2.4e-116 423.3 472 59.7
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 5.9e-115 418.7 465 60.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 7.3e-113 411.8 422 64.7
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 2.1e-112 410.2 439 61.3
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 4.7e-112 409.1 431 61.3
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.4e-111 407.5 476 57.6
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 8.9e-111 404.8 400 65.8
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.7e-109 400.6 438 58.2
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-108 397.9 460 59.3
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.1e-108 397.9 391 65.5
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 5.4e-108 395.6 371 68.7
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.2e-107 394.4 315 76.8
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 2.7e-107 393.3 461 59.0
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 7.8e-107 391.7 336 73.5
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 7.8e-107 391.7 314 76.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 5.0e-106 389.0 462 59.1
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.0e-106 389.0 390 65.9
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.5e-105 387.5 460 58.9
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.9e-105 387.1 300 69.7
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 5.6e-105 385.6 462 58.0
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 5.6e-105 385.6 462 58.0
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 9.5e-105 384.8 260 79.2
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 3.6e-104 382.9 461 58.8
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 3.6e-104 382.9 461 58.8
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 1.5e-102 377.5 392 61.7
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 4.4e-102 375.9 369 66.9
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 7.5e-102 375.2 441 58.3
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.2e-101 373.6 413 59.1
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.2e-99 367.9 460 54.8
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 2.7e-99 366.7 449 56.3
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 8.6e-98 361.7 438 55.3
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.8e-95 354.0 327 68.2
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 3.4e-94 349.7 426 55.2
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 6.2e-88 328.9 250 70.0
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.7e-85 320.9 287 70.0
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 2.8e-80 303.5 329 62.9
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.1e-80 302.0 200 80.5
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.6e-75 287.7 457 42.9
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.3e-72 278.1 371 52.3
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 6.9e-71 272.3 228 68.0
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 2.4e-63 247.3 336 50.9
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 2.3e-58 230.7 248 63.3
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 2.0e-54 217.6 351 46.2
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.2e-51 208.4 335 48.7
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 3.5e-51 206.8 131 83.2
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.1e-51 206.1 331 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 2.3e-50 204.1 307 47.9
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.4e-47 194.9 240 48.3
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.7e-40 171.4 123 74.8
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 2.4e-39 167.5 249 42.2
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 7.9e-35 152.5 210 41.9
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 2.0e-30 137.9 77 93.5
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.7e-24 117.1 170 52.4
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.8e-18 98.2 60 81.7
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 5.2e-18 96.7 174 36.8
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.0e-13 82.4 110 40.9
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.0e-10 72.4 161 36.6
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 1.3e-08 65.5 146 32.9


User provided reference genes

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