Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 1.7e-219 765.8 404 100.0
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.5e-167 593.2 411 79.1
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 2.7e-76 290.0 448 49.8
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.3e-67 260.4 435 46.7
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.0e-62 245.0 444 45.5
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 7.2e-61 238.8 444 42.6
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 3.6e-60 236.5 443 42.7
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.8e-59 234.2 450 43.1
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.3e-59 233.8 426 44.4
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 3.0e-59 233.4 397 48.1
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.1e-56 223.4 462 37.9
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 4.1e-56 223.0 404 44.3
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.2e-55 221.5 462 39.8
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 5.9e-55 219.2 443 41.1
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 5.9e-55 219.2 462 39.6
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 1.9e-53 214.2 387 44.2
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 4.2e-53 213.0 461 36.0
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 5.5e-53 212.6 463 37.1
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.0e-51 208.4 401 42.4
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 4.0e-51 206.5 421 43.7
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.5e-50 204.5 461 35.6
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 2.0e-50 204.1 429 38.7
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 2.0e-50 204.1 454 37.0
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 5.7e-50 202.6 403 42.9
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 1.8e-48 197.6 440 39.8
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 2.4e-48 197.2 450 40.4
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 2.4e-48 197.2 411 40.4
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 7.0e-48 195.7 423 39.7
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.6e-47 194.5 407 40.8
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 5.9e-47 192.6 426 42.3
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 3.3e-45 186.8 462 41.3
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 4.7e-44 183.0 439 38.0
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 4.7e-44 183.0 412 41.0
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.2e-42 178.3 415 38.8
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 1.2e-42 178.3 466 39.1
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 9.8e-42 175.3 439 37.8
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.2e-41 174.1 417 38.4
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 2.9e-41 173.7 232 56.9
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 8.3e-41 172.2 433 36.0
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 8.3e-41 172.2 363 39.9
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 7.0e-40 169.1 237 46.8
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 7.0e-40 169.1 309 43.4
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 1.2e-39 168.3 442 36.0
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.6e-39 167.9 416 36.3
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.6e-39 167.9 414 36.5
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 4.6e-39 166.4 441 38.3
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.0e-38 165.2 459 37.0
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 2.3e-38 164.1 461 35.1
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 4.3e-37 159.8 461 34.7
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 9.5e-37 158.7 435 36.6
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 2.1e-36 157.5 470 38.5
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.8e-36 157.1 488 34.2
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 3.6e-36 156.8 453 35.8
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 6.2e-36 156.0 453 35.8
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 8.0e-36 155.6 408 35.5
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.8e-35 154.5 451 36.1
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.8e-35 154.5 435 35.2
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 3.1e-35 153.7 456 34.4
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 6.8e-35 152.5 391 35.3
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 5.8e-34 149.4 455 34.9
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 7.5e-34 149.1 428 37.9
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 2.2e-33 147.5 389 36.0
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 2.9e-33 147.1 439 38.7
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 3.7e-33 146.7 423 35.0
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 1.4e-32 144.8 422 33.9
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 3.2e-32 143.7 413 34.6
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 4.1e-32 143.3 263 39.9
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.6e-31 139.8 434 35.0
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 6.0e-31 139.4 431 32.9
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 2.3e-30 137.5 398 35.7
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 8.6e-30 135.6 426 33.8
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 1.1e-29 135.2 417 34.5
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 2.5e-29 134.0 447 32.4
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 4.3e-29 133.3 418 33.7
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 4.3e-29 133.3 412 34.0
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 1.6e-28 131.3 425 33.4
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 1.6e-28 131.3 412 39.6
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 2.8e-28 130.6 423 33.6
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 2.8e-28 130.6 422 32.9
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 8.1e-28 129.0 358 37.2
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 2.3e-27 127.5 415 33.7
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 2.3e-27 127.5 252 44.8
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.2e-26 125.2 405 36.8
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 1.3e-25 121.7 424 33.5
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 2.2e-25 120.9 446 32.1
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 2.9e-25 120.6 415 32.0
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 3.7e-25 120.2 410 32.2
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 4.1e-24 116.7 396 31.3
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 7.1e-24 115.9 419 32.5
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 9.2e-24 115.5 419 32.7
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 2.7e-23 114.0 430 32.1
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 6.0e-23 112.8 229 39.3
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 1.7e-22 111.3 405 31.4
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.7e-22 111.3 408 31.9
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 3.9e-22 110.2 349 30.7
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 6.6e-22 109.4 423 30.7
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 8.6e-22 109.0 392 31.9
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.9e-21 107.8 457 30.9
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 2.5e-21 107.5 463 30.0
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 4.3e-21 106.7 411 31.9
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 7.3e-21 105.9 460 29.6
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 9.5e-21 105.5 392 30.9
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.6e-20 104.8 468 30.1
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 2.1e-20 104.4 409 28.9
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 3.6e-20 103.6 417 31.2
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 5.2e-19 99.8 292 37.0
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 6.8e-19 99.4 462 28.8
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.0e-18 97.8 274 38.7
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 2.6e-18 97.4 206 39.8
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.4e-18 97.1 279 36.6
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 4.4e-18 96.7 390 31.5
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.4e-16 91.7 315 32.7
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.9e-16 91.3 223 36.8
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 5.4e-16 89.7 408 30.6
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 4.6e-15 86.7 470 27.9
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.6e-15 86.7 318 30.2
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 4.6e-15 86.7 390 29.0
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 6.0e-15 86.3 417 29.0
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 7.8e-15 85.9 318 30.2
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 2.3e-14 84.3 427 27.9
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.6e-12 78.2 399 28.1
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 6.2e-12 76.3 444 29.3
Potri.004G052900 Populus trichocarpa HOM05D058718 ORTHO05D010890 1.4e-11 75.1 416 28.4
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 1.8e-11 74.7 443 27.8
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 9.0e-11 72.4 280 32.5
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 2.6e-10 70.9 260 31.2
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 3.4e-10 70.5 191 34.0
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 4.4e-10 70.1 321 29.9
CiPaw.09G066800 Carya illinoinensis HOM05D009670 ORTHO05D010890 5.8e-10 69.7 443 27.5
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 7.6e-10 69.3 248 31.5
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 3.2e-08 63.9 397 28.2
Cpa.g.sc7.22 Carica papaya HOM05D013066 ORTHO05D010890 4.2e-08 63.5 416 27.2
Ca_00413_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 1.2e-07 62.0 444 28.4
Ca_30157_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 1.2e-07 62.0 444 28.4
Gohir.D05G159900 Gossypium hirsutum HOM05D013066 ORTHO05D010890 2.7e-07 60.8 441 26.8
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 3.9e-06 57.0 116 37.9
Gohir.A05G157001 Gossypium hirsutum HOM05D013066 ORTHO05D010890 6.6e-06 56.2 441 26.3
Gorai.009G164800 Gossypium raimondii HOM05D013066 ORTHO05D010890 6.6e-06 56.2 441 26.3


User provided reference genes

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