Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.1e-69 266.5 135 100.0
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.6e-55 218.8 135 84.4
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.6e-49 199.5 135 79.3
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 5.1e-43 177.9 126 75.4
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 5.8e-39 164.5 135 65.2
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 5.8e-39 164.5 135 65.2
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 4.1e-37 158.3 137 66.4
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 9.2e-37 157.1 124 67.7
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 3.1e-32 142.1 135 60.0
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 4.9e-30 134.8 136 56.6
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 3.0e-27 125.6 144 52.1
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 3.0e-27 125.6 136 55.1
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 5.1e-27 124.8 135 52.6
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 6.6e-27 124.4 135 52.6
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 8.7e-27 124.0 136 53.7
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 8.7e-27 124.0 145 51.0
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 1.1e-26 123.6 137 54.0
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 1.1e-26 123.6 138 55.1
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.5e-26 122.5 134 57.5
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.6e-25 119.8 136 52.2
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 2.1e-25 119.4 139 54.0
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 2.1e-25 119.4 146 48.6
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.6e-25 118.6 137 53.3
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 1.1e-24 117.1 145 50.3
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.1e-24 117.1 138 53.6
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.4e-24 116.7 139 54.7
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.4e-24 116.7 137 52.6
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.1e-24 115.5 137 52.6
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 3.1e-24 115.5 146 50.0
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.0e-24 115.2 137 52.6
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 6.9e-24 114.4 138 51.4
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 9.0e-24 114.0 137 53.3
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 1.5e-23 113.2 142 45.8
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 2.0e-23 112.8 141 49.6
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 2.9e-22 109.0 137 51.1
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 6.4e-22 107.8 142 48.6
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 4.2e-21 105.1 131 50.4
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 5.4e-21 104.8 111 54.1
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 7.1e-21 104.4 128 47.7
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.7e-20 102.4 131 48.1
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 3.5e-20 102.1 130 47.7
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 4.6e-20 101.7 131 48.1
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 6.0e-20 101.3 135 49.6
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 7.9e-20 100.9 127 46.5
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 7.9e-20 100.9 127 46.5
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 7.9e-20 100.9 127 48.0
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.0e-19 100.5 117 50.4
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.3e-19 100.1 142 45.8
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.8e-19 99.8 142 47.2
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 1.8e-19 99.8 106 53.8
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 3.0e-19 99.0 137 44.5
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.9e-19 98.6 131 47.3
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 5.1e-19 98.2 131 46.6
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 5.1e-19 98.2 133 51.9
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 5.1e-19 98.2 131 48.9
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 6.7e-19 97.8 122 47.5
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 1.1e-18 97.1 127 47.2
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.5e-18 96.7 139 45.3
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.9e-18 96.3 131 45.0
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 3.3e-18 95.5 138 48.6
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 2.8e-17 92.4 106 50.9
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 4.8e-17 91.7 132 46.2
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 8.1e-17 90.9 132 44.7
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 8.1e-17 90.9 141 44.7
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.4e-16 89.4 131 45.0
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 2.4e-16 89.4 136 41.2
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 3.1e-16 89.0 131 42.7
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 6.9e-16 87.8 132 43.9
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 9.0e-16 87.4 144 39.6
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 9.0e-16 87.4 137 46.0
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.5e-15 86.7 131 44.3
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 1.5e-15 86.7 117 43.6
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 3.4e-15 85.5 133 42.9
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 4.5e-15 85.1 139 44.6
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 5.8e-15 84.7 126 46.0
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 7.6e-15 84.3 134 43.3
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 9.9e-15 84.0 127 45.7
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.2e-14 82.8 131 43.5
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 4.9e-14 81.6 127 43.3
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 1.4e-13 80.1 128 43.0
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 1.9e-13 79.7 143 42.0
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 3.5e-12 75.5 138 39.1
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 6.0e-12 74.7 148 38.5
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 6.0e-12 74.7 102 49.0
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.8e-11 73.2 147 38.8
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 1.8e-11 73.2 130 43.1
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.3e-11 72.8 148 37.8
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 3.0e-11 72.4 138 36.2
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 3.9e-11 72.0 102 49.0
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 5.1e-11 71.6 120 43.3
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 5.1e-11 71.6 135 36.3
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 6.7e-11 71.2 102 47.1
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 8.7e-11 70.9 131 37.4
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 1.1e-10 70.5 128 36.7
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 2.5e-10 69.3 136 40.4
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 2.5e-10 69.3 105 45.7
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 5.6e-10 68.2 138 36.2
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 5.6e-10 68.2 141 39.0
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 7.4e-10 67.8 134 35.1
FvH4_3g02050 Fragaria vesca HOM05D011727 ORTHO05D004912 7.4e-10 67.8 97 50.5
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 9.6e-10 67.4 99 39.4
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.6e-09 66.6 100 40.0
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.6e-09 66.6 130 38.5
Ah.04g165930 Amaranthus hybridus HOM05D007398 ORTHO05D004912 2.1e-09 66.2 132 39.4
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 2.1e-09 66.2 136 34.6
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 2.1e-09 66.2 136 34.6
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 2.8e-09 65.9 117 35.9
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 2.8e-09 65.9 134 35.1
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 3.7e-09 65.5 136 34.6
FAN21G2105 Fragaria x ananassa HOM05D011727 ORTHO05D004912 3.7e-09 65.5 97 49.5
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 4.8e-09 65.1 131 35.1
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 4.8e-09 65.1 109 42.2
FAN25G2989 Fragaria x ananassa HOM05D011727 ORTHO05D004912 4.8e-09 65.1 97 48.5
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 4.8e-09 65.1 122 33.6
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 6.2e-09 64.7 138 34.8
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 6.2e-09 64.7 120 42.5
RcHm_v2.0_Chr5g0002951 Rosa chinensis HOM05D011727 ORTHO05D004912 6.2e-09 64.7 90 47.8
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 8.2e-09 64.3 115 34.8
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 3.1e-08 62.4 113 38.9
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 6.9e-08 61.2 115 32.2
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 9.0e-08 60.8 136 32.4
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.2e-07 60.5 133 33.8
Oeu002741.1 Olea europaea HOM05D011575 ORTHO05D004912 1.2e-07 60.5 112 39.3
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 1.2e-07 60.5 125 40.8
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 1.5e-07 60.1 138 33.3
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 2.0e-07 59.7 106 37.7
Migut.M01320 Erythranthe guttata HOM05D011575 ORTHO05D004912 2.0e-07 59.7 106 38.7
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 3.4e-07 58.9 118 35.6
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 7.6e-07 57.8 138 34.1
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 7.6e-07 57.8 100 39.0
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 7.6e-07 57.8 88 39.8
PGSC0003DMG400016451 Solanum tuberosum HOM05D011575 ORTHO05D004912 1.0e-06 57.4 103 39.8
SGA_v2.0_scaffold7G03838 Striga asiatica HOM05D011575 ORTHO05D004912 1.0e-06 57.4 97 40.2
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 1.7e-06 56.6 118 38.1
Solyc02g080560.1 Solanum lycopersicum HOM05D011575 ORTHO05D004912 1.7e-06 56.6 103 39.8
Sopen02g025260 Solanum pennellii HOM05D011575 ORTHO05D004912 1.7e-06 56.6 103 39.8
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 2.9e-06 55.8 117 34.2
ClCG03G014620 Citrullus lanatus HOM05D032147 ORTHO05D034646 4.9e-06 55.1 122 35.2
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 6.5e-06 54.7 107 38.3


User provided reference genes

Program Settings