Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 4.6e-264 914.1 482 100.0
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.3e-245 852.8 469 94.5
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.1e-244 849.7 469 93.6
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 3.8e-242 841.3 467 93.8
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.2e-240 836.3 469 92.8
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 7.9e-240 833.6 470 91.3
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 7.9e-240 833.6 469 91.9
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 3.0e-239 831.6 469 91.5
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 3.9e-239 831.2 469 91.7
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 8.8e-239 830.1 470 92.3
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.5e-238 829.3 469 92.5
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 3.3e-238 828.2 478 89.3
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 3.3e-238 828.2 469 91.3
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.3e-238 827.8 467 93.1
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 7.4e-238 827.0 469 91.5
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 9.7e-238 826.6 469 91.3
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.7e-237 825.9 470 91.1
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 8.2e-237 823.5 469 91.7
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 3.1e-236 821.6 469 90.0
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 5.3e-236 820.8 469 90.2
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 5.3e-236 820.8 469 91.3
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 6.9e-236 820.5 469 90.0
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.2e-235 819.7 468 91.5
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.4e-235 818.1 469 89.8
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 7.7e-235 817.0 469 89.3
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.3e-234 816.2 469 89.6
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.7e-234 815.8 469 89.1
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.9e-234 815.1 469 89.6
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.9e-234 815.1 469 89.6
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 5.0e-234 814.3 469 89.6
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 6.5e-234 813.9 469 89.3
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 6.5e-234 813.9 470 90.9
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 8.5e-234 813.5 506 85.6
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 1.4e-233 812.8 469 90.0
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.9e-233 812.4 471 89.8
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 2.5e-233 812.0 469 89.6
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 7.2e-233 810.4 469 89.8
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 1.2e-232 809.7 470 90.4
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 2.1e-232 808.9 469 90.2
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.1e-232 808.9 470 89.1
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.0e-231 806.6 469 90.8
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.4e-231 806.2 469 89.6
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 8.8e-231 803.5 469 89.3
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 8.8e-231 803.5 473 87.5
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 7.4e-230 800.4 470 87.9
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 1.3e-229 799.7 470 87.9
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 2.8e-229 798.5 493 85.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.1e-228 796.6 470 87.7
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 2.4e-228 795.4 469 88.7
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.4e-228 795.4 469 88.3
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 3.1e-228 795.0 468 88.5
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 3.1e-228 795.0 506 83.0
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 2.0e-227 792.3 468 88.2
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 3.4e-227 791.6 463 88.6
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 8.5e-226 786.9 469 87.2
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.2e-224 783.1 469 86.8
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 4.7e-224 781.2 469 86.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 8.0e-224 780.4 545 77.6
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.4e-223 779.6 469 86.4
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.4e-223 779.6 469 85.9
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 3.9e-223 778.1 469 86.8
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 3.9e-223 778.1 449 90.6
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.9e-223 778.1 469 86.4
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 3.3e-222 775.0 469 86.1
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 9.7e-222 773.5 469 85.5
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 2.8e-221 771.9 469 85.3
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.8e-221 771.2 469 85.9
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.8e-221 771.2 469 85.9
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 6.3e-221 770.8 469 85.3
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.1e-220 770.0 469 85.5
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 1.8e-220 769.2 469 85.1
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 5.3e-220 767.7 469 85.5
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 5.3e-220 767.7 469 84.9
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 9.1e-220 766.9 469 84.9
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 9.1e-220 766.9 469 84.9
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 4.5e-219 764.6 469 84.6
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 4.5e-219 764.6 469 84.9
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 2.9e-218 761.9 441 89.1
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 8.5e-218 760.4 470 85.1
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 8.5e-218 760.4 470 85.1
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 1.5e-217 759.6 470 85.7
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 4.7e-216 754.6 471 84.7
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 4.0e-215 751.5 493 81.1
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.2e-214 750.0 497 79.9
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.3e-213 746.5 470 84.3
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 4.8e-213 744.6 491 81.1
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 3.5e-211 738.4 492 79.5
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 8.5e-210 733.8 418 90.4
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 7.7e-203 710.7 397 92.7
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 4.2e-201 704.9 470 81.7
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.2e-198 696.8 418 88.3
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.8e-196 689.5 418 86.1
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.8e-196 689.5 418 86.1
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 8.6e-194 680.6 423 83.9
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.3e-193 678.7 461 79.0
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.6e-193 677.9 472 78.6
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 4.4e-190 668.3 469 73.8
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.9e-188 662.9 383 90.6
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 4.0e-175 618.6 350 90.3
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 4.0e-175 618.6 373 86.1
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 6.0e-171 604.7 467 67.7
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 7.8e-171 604.4 469 71.9
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.0e-170 604.0 340 93.8
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.2e-168 597.0 374 83.7
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.9e-164 583.2 470 63.0
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 7.8e-163 577.8 365 84.7
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 3.6e-160 568.9 324 93.5
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 3.4e-142 509.2 312 82.7
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 7.9e-139 498.0 308 88.3
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 1.5e-137 493.8 365 72.6
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.3e-129 466.1 324 79.3
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.3e-112 411.0 246 89.4
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.4e-90 337.8 312 64.1
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 9.8e-89 331.6 238 75.6
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.2e-86 324.7 182 85.7
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.7e-86 323.6 173 91.3
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.0e-83 312.0 302 58.6
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 2.4e-79 300.4 505 38.2
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 5.2e-74 282.7 210 62.4
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.7e-72 276.6 294 55.8
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 8.6e-69 265.4 160 90.0
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 1.5e-60 238.0 195 71.3
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 2.3e-58 230.7 140 89.3
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.0e-58 229.9 407 42.3
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 2.7e-54 217.2 119 96.6
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 2.4e-47 194.1 332 37.3
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.2e-47 193.7 111 92.8
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.6e-46 191.4 105 86.7
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 2.1e-46 191.0 111 90.1
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.5e-46 190.3 107 82.2
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.6e-43 181.4 491 30.3
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.2e-39 167.2 91 93.4
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.4e-32 142.5 76 92.1
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 2.3e-29 134.4 72 87.5
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.1e-28 132.1 81 82.7
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 2.5e-28 131.0 72 88.9
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.6e-27 128.3 73 86.3
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.1e-27 127.9 72 86.1
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.7e-27 127.1 77 81.8
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 8.4e-24 115.9 79 75.9
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.2e-22 112.1 99 64.6
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.0e-21 109.0 57 86.0
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 7.4e-20 102.8 57 86.0
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.9e-16 90.9 56 89.3
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.4e-15 88.6 52 86.5
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 5.5e-15 86.7 74 64.9
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.3e-13 82.0 52 86.5
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.8e-13 81.6 46 95.7
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 5.1e-13 80.1 44 90.9
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 7.9e-06 56.2 33 87.9


User provided reference genes

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