Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 1.3e-128 463.0 225 100.0
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.5e-108 396.4 225 85.8
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 9.8e-108 393.7 228 84.6
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 2.3e-104 382.5 225 84.4
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 3.8e-104 381.7 225 84.4
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 5.0e-104 381.3 225 82.2
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-101 372.9 225 81.3
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.8e-101 372.9 225 81.3
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 5.2e-101 371.3 225 81.3
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.2e-100 370.2 225 81.8
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.0e-100 369.4 226 81.9
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.0e-100 369.4 226 81.9
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 2.6e-100 369.0 225 79.6
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.2e-99 365.9 225 80.4
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 2.2e-99 365.9 223 79.8
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 3.7e-99 365.2 224 80.8
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 3.7e-99 365.2 225 79.6
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 8.3e-99 364.0 225 78.2
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.1e-98 363.6 225 78.2
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.4e-98 363.2 225 78.2
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.4e-98 363.2 225 78.7
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 1.8e-98 362.8 225 80.0
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.4e-98 362.5 225 79.6
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 4.1e-98 361.7 225 79.1
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 5.4e-98 361.3 225 77.8
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 7.0e-98 360.9 225 78.7
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 9.2e-98 360.5 226 79.2
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.2e-97 360.1 225 76.4
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.6e-97 359.8 227 78.0
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.6e-97 359.8 225 80.4
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.0e-97 359.4 225 78.2
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.7e-97 359.0 225 79.1
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 2.7e-97 359.0 227 77.5
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 2.7e-97 359.0 225 80.4
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 4.6e-97 358.2 227 77.5
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 4.6e-97 358.2 225 76.9
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 4.6e-97 358.2 225 77.3
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 5.9e-97 357.8 225 76.4
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 7.8e-97 357.5 225 77.8
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 7.8e-97 357.5 225 78.2
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 7.8e-97 357.5 225 76.9
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.3e-96 356.7 225 77.8
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 78.2
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 76.9
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.3e-96 355.9 225 77.8
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.3e-96 355.9 225 77.8
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.9e-96 355.5 225 78.2
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 3.9e-96 355.1 225 77.8
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.9e-96 355.1 225 77.8
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.0e-96 354.8 225 76.9
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 6.6e-96 354.4 225 78.2
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.5e-95 353.2 225 77.3
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 77.8
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 4.3e-95 351.7 224 78.6
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 76.9
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 76.0
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 2.1e-94 349.4 225 78.2
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 76.0
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 6.2e-94 347.8 225 76.9
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 76.9
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.0e-93 347.1 279 65.9
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 5.2e-93 344.7 225 76.4
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 75.6
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 6.8e-93 344.4 260 68.5
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.5e-92 343.2 226 73.9
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 3.7e-91 338.6 226 75.2
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 1.3e-88 330.1 197 81.2
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.3e-88 330.1 225 70.7
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 2.3e-88 329.3 266 65.4
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 3.0e-88 328.9 197 81.7
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 69.3
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 71.6
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 71.1
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.5e-87 326.6 208 76.9
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 68.4
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 68.4
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 5.6e-87 324.7 225 71.1
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.2e-86 323.6 225 70.7
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.6e-86 323.2 225 71.6
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.6e-86 323.2 225 70.7
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.6e-86 323.2 225 70.7
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 3.6e-86 322.0 225 71.6
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 3.6e-86 322.0 225 70.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 8.1e-86 320.9 225 70.7
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.1e-85 320.5 228 69.7
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.8e-85 319.7 225 70.2
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 3.1e-85 318.9 225 68.9
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 4.0e-85 318.5 227 70.0
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 5.2e-85 318.2 225 70.2
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 6.8e-85 317.8 225 72.4
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 2.0e-84 316.2 227 70.5
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 2.0e-84 316.2 225 68.9
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 68.9
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 9.8e-84 313.9 225 68.9
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 9.8e-84 313.9 225 68.4
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.7e-83 313.2 228 70.2
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.7e-83 312.0 225 67.6
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 4.9e-83 311.6 225 68.4
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 1.1e-82 310.5 232 66.4
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 3.5e-81 305.4 225 67.6
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.5e-79 300.1 225 66.7
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 3.3e-79 298.9 226 66.4
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 4.3e-79 298.5 225 68.9
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 7.3e-79 297.7 210 67.6
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 4.7e-78 295.0 226 65.5
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 3.1e-77 292.4 225 63.6
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 1.5e-76 290.0 225 63.1
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.5e-76 290.0 225 63.6
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.3e-75 287.0 217 65.4
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 3.7e-75 285.4 178 77.5
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 3.7e-75 285.4 225 66.2
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.5e-71 272.7 174 77.6
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 3.6e-70 268.9 252 58.7
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 3.6e-70 268.9 252 58.7
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.1e-69 267.3 225 57.3
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.5e-68 263.5 225 63.6
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.3e-67 260.4 225 62.7
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 1.3e-62 243.8 229 58.5
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 3.6e-62 242.3 250 57.6
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 4.8e-62 241.9 243 52.7
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 3.4e-60 235.7 225 52.9
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 9.3e-58 227.6 225 52.4
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 7.4e-55 218.0 225 49.8
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 6.4e-51 204.9 168 61.9
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.6e-49 198.7 122 75.4
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.1e-45 187.6 225 45.3
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 2.0e-44 183.3 228 44.3
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 5.8e-44 181.8 232 43.1
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.1e-42 174.9 100 82.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-41 173.3 100 81.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 6.7e-40 168.3 130 63.8
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.3e-38 164.1 207 48.8
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 5.0e-35 152.1 150 54.0
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 6.5e-27 125.2 72 80.6
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 2.5e-23 113.2 67 73.1
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 4.5e-20 102.4 78 62.8
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 5.9e-20 102.1 105 53.3
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 4.2e-18 95.9 79 62.0
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.2e-17 94.4 51 86.3
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.2e-17 94.4 51 86.3
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 2.1e-17 93.6 122 46.7
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.7e-17 92.4 51 84.3
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.8e-16 90.5 57 78.9
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 6.7e-16 88.6 69 68.1
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 7.4e-15 85.1 223 32.7
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.4e-13 80.1 51 74.5
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.5e-10 70.9 51 66.7
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.2e-10 69.7 51 72.5
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 2.7e-09 66.6 64 57.8
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 2.0e-07 60.5 56 57.1


User provided reference genes

Program Settings