Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 8.3e-230 800.0 413 100.0
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 6.4e-198 694.1 417 86.1
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 9.7e-162 573.9 425 74.1
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.2e-161 572.8 416 73.6
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 5.0e-158 561.6 423 72.3
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 8.5e-158 560.8 398 74.1
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.1e-157 560.5 427 71.2
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 5.5e-157 558.1 392 74.7
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 9.4e-157 557.4 383 73.6
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.6e-156 556.6 393 75.1
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 4.7e-156 555.1 425 72.2
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 6.1e-156 554.7 397 72.8
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 6.7e-155 551.2 395 71.6
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 8.8e-155 550.8 401 70.8
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 5.7e-154 548.1 391 73.4
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 7.4e-154 547.7 422 73.2
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.1e-152 543.9 422 70.1
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.4e-152 543.5 399 69.9
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 5.3e-152 541.6 388 72.4
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 5.3e-152 541.6 395 71.1
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 5.3e-152 541.6 397 70.8
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 3.5e-151 538.9 392 72.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 5.9e-151 538.1 387 71.3
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 7.7e-151 537.7 395 70.4
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.3e-150 537.0 394 72.1
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 2.2e-150 536.2 396 72.0
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.0e-150 535.0 396 70.7
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 8.5e-150 534.3 395 69.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.5e-149 533.5 427 67.7
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.9e-149 533.1 430 67.9
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 2.5e-149 532.7 389 72.5
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 3.2e-149 532.3 402 68.9
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 4.2e-149 531.9 429 68.8
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 4.2e-149 531.9 396 71.2
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.7e-148 529.3 385 71.9
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 4.7e-148 528.5 425 69.4
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 6.1e-148 528.1 419 69.9
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 5.2e-147 525.0 398 69.8
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.8e-145 519.2 383 70.8
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 4.8e-145 518.5 430 67.9
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.8e-145 518.5 430 67.9
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.8e-144 516.5 386 68.7
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.4e-144 516.2 386 70.2
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.4e-144 516.2 430 67.7
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 7.0e-144 514.6 391 69.3
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.6e-143 513.5 403 67.2
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 2.0e-143 513.1 395 67.3
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.0e-143 513.1 390 70.0
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 4.5e-143 511.9 398 68.3
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 5.9e-143 511.5 419 69.7
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.3e-142 510.4 387 68.7
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.7e-142 510.0 387 71.1
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 6.5e-142 508.1 395 67.3
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 8.5e-142 507.7 397 68.8
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.1e-141 507.3 395 66.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-141 507.3 399 66.7
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.1e-141 507.3 399 66.7
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.5e-141 506.9 395 70.1
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 5.5e-141 505.0 392 68.9
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.2e-141 504.6 399 66.4
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 6.1e-140 501.5 397 68.3
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.0e-139 500.7 382 68.8
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 5.2e-139 498.4 399 67.4
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 8.8e-139 497.7 405 65.2
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 4.4e-138 495.4 401 66.6
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.7e-137 493.4 389 66.6
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.7e-137 493.4 399 67.9
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.2e-137 493.0 391 68.0
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.2e-137 493.0 391 68.0
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.8e-136 490.0 396 66.2
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.4e-136 489.6 432 63.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.2e-135 487.3 360 70.3
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.0e-135 486.5 368 71.2
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.7e-135 486.1 424 63.2
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.7e-134 483.4 397 65.5
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.0e-134 481.9 399 65.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.1e-133 480.7 396 66.2
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 2.5e-133 479.6 395 66.3
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.2e-133 478.8 387 67.2
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.2e-132 477.2 393 64.4
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 2.7e-132 476.1 389 66.3
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.5e-130 470.3 397 64.7
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 5.7e-130 468.4 401 64.8
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 5.7e-130 468.4 395 64.3
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.2e-129 466.5 395 64.8
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.2e-129 466.5 395 64.6
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.8e-129 466.1 394 65.5
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.7e-129 465.7 422 64.0
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.7e-129 465.7 392 65.6
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 6.3e-129 464.9 390 65.4
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.1e-128 464.2 394 65.5
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.1e-128 464.2 397 64.2
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.0e-127 459.9 395 64.1
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 5.9e-127 458.4 395 63.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 5.9e-127 458.4 395 63.8
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.3e-126 457.2 436 61.9
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 6.6e-126 454.9 390 62.1
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.9e-125 453.4 392 64.0
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.9e-125 453.4 391 62.9
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.2e-124 450.7 399 63.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.4e-123 447.2 428 61.0
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.3e-123 446.4 395 61.8
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 3.0e-123 446.0 382 62.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-122 442.2 404 62.6
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 9.8e-122 441.0 397 63.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 4.9e-121 438.7 380 62.6
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 6.4e-121 438.3 397 62.7
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 5.4e-120 435.3 396 60.6
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.6e-119 433.7 382 63.1
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.6e-118 428.3 396 59.8
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.9e-117 426.8 395 59.5
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.2e-116 424.1 451 57.0
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-116 424.1 392 61.5
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 3.1e-115 419.5 392 61.0
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.7e-113 413.7 383 59.8
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.4e-112 408.7 392 56.6
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.2e-112 407.9 391 56.8
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.6e-111 407.1 392 56.4
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 9.5e-109 397.9 321 63.9
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 3.7e-105 386.0 310 68.1
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.5e-101 373.2 394 52.8
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 4.7e-92 342.4 435 49.4
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 9.6e-85 318.2 318 57.9
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 6.4e-81 305.4 240 68.8
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.1e-72 278.1 296 50.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.0e-70 270.0 241 62.7
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 3.7e-68 263.1 395 40.5
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 8.4e-65 251.9 157 79.6
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.4e-64 251.1 203 67.0
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 2.8e-60 236.9 224 58.0
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 8.2e-60 235.3 243 53.1
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.5e-58 231.1 153 79.1
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 2.0e-58 230.7 155 76.1
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 9.3e-56 221.9 162 74.1
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.5e-53 214.5 145 73.1
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 6.7e-46 189.1 356 35.4
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 3.3e-45 186.8 309 37.5
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.0e-25 122.1 111 60.4
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.7e-17 94.7 76 60.5
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-16 92.0 70 71.4
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.2e-07 62.0 164 31.7
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 6.1e-07 59.7 153 32.7


User provided reference genes

Program Settings