Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.7e-163 579.3 306 100.0
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.7e-131 473.0 291 86.3
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.9e-130 469.5 296 81.4
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 8.9e-128 460.7 295 81.0
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.4e-127 458.8 293 81.2
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 5.7e-127 458.0 294 80.3
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 7.8e-124 447.6 296 79.4
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.0e-123 447.2 298 79.2
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.7e-123 446.4 297 76.4
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.3e-123 446.0 298 77.5
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 6.6e-123 444.5 298 77.2
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.8e-120 436.4 296 77.7
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 3.1e-120 435.6 294 76.9
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 4.0e-120 435.3 294 76.9
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.2e-120 434.9 292 77.1
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 8.9e-120 434.1 297 76.1
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 5.8e-119 431.4 292 76.7
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 5.8e-119 431.4 298 76.5
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 9.8e-119 430.6 295 77.6
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.3e-118 430.3 298 75.2
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 2.2e-118 429.5 292 75.3
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.9e-118 429.1 298 76.2
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.9e-118 429.1 298 76.2
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.7e-118 428.7 298 74.8
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.7e-118 428.7 298 74.8
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.1e-117 427.2 292 76.7
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.1e-117 427.2 292 76.7
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.1e-117 427.2 299 73.9
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 1.9e-117 426.4 291 76.3
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.9e-117 426.4 294 76.2
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.9e-117 426.4 297 76.1
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 3.2e-117 425.6 292 75.3
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.2e-116 423.7 297 73.4
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.6e-116 423.3 292 75.7
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.0e-116 422.9 296 73.6
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.0e-116 422.9 286 76.9
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 4.6e-116 421.8 294 74.8
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 4.6e-116 421.8 295 75.6
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 7.8e-116 421.0 292 74.7
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 1.0e-115 420.6 287 74.9
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-115 419.9 296 73.0
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.3e-115 419.5 298 74.8
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 3.0e-115 419.1 294 74.8
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 3.0e-115 419.1 295 75.3
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.9e-115 418.7 292 75.0
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 6.6e-115 417.9 307 73.0
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 8.6e-115 417.5 296 72.6
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.1e-114 417.2 291 75.3
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 1.1e-114 417.2 296 73.3
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.5e-114 416.8 291 73.5
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 2.5e-114 416.0 294 74.8
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 2.5e-114 416.0 292 74.7
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 3.3e-114 415.6 295 71.9
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 3.3e-114 415.6 292 73.6
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 5.6e-114 414.8 293 73.7
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 9.5e-114 414.1 288 74.7
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.6e-113 413.3 297 72.1
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.8e-113 412.5 297 72.4
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.8e-113 412.5 297 72.4
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 3.6e-113 412.1 297 72.4
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.6e-113 412.1 291 74.6
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 4.7e-113 411.8 288 75.3
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.1e-112 410.6 292 73.3
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 5.2e-112 408.3 285 74.4
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 5.2e-112 408.3 297 72.4
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 2.0e-111 406.4 301 74.1
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 2.0e-111 406.4 354 63.8
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 2.6e-111 406.0 323 68.4
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 4.4e-111 405.2 285 74.7
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 7.5e-111 404.4 270 75.9
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.7e-110 403.3 298 69.8
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.2e-110 402.9 291 70.8
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 3.7e-110 402.1 301 73.1
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 3.7e-110 402.1 298 69.1
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 3.7e-110 402.1 240 83.8
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 4.9e-110 401.7 286 74.8
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.1e-109 400.6 293 72.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 1.1e-109 400.6 294 72.1
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.4e-109 400.2 299 71.6
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 3.2e-109 399.1 286 73.8
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.6e-108 396.7 297 70.4
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 2.1e-108 396.4 303 71.6
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 2.7e-108 396.0 297 71.7
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.5e-108 395.6 286 71.3
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 6.0e-108 394.8 298 70.1
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 6.0e-108 394.8 295 69.8
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.3e-107 392.9 299 71.9
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 3.0e-107 392.5 325 66.2
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 8.6e-107 391.0 269 73.6
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.5e-106 390.2 286 73.1
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 5.6e-106 388.3 298 68.5
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 2.1e-105 386.3 292 70.9
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 3.6e-105 385.6 310 68.1
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 4.7e-105 385.2 291 69.8
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 6.2e-105 384.8 294 70.7
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.3e-104 382.9 286 71.0
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.2e-102 376.3 347 61.7
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 2.9e-102 375.9 291 69.4
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 2.9e-102 375.9 291 69.4
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 3.7e-102 375.6 292 68.5
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 3.7e-102 375.6 291 69.4
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 6.4e-102 374.8 292 69.9
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 8.3e-102 374.4 343 61.8
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 2.4e-101 372.9 288 68.8
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 3.2e-101 372.5 289 69.2
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.6e-100 370.2 291 69.1
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.6e-100 370.2 288 69.4
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.7e-100 369.4 293 68.3
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 2.7e-100 369.4 291 69.1
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 2.7e-100 369.4 291 69.1
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.3e-99 367.1 288 68.8
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 5.1e-99 365.2 293 68.9
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 1.1e-98 364.0 289 68.2
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.1e-98 364.0 352 59.4
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 7.3e-98 361.3 289 67.1
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 9.5e-98 360.9 295 66.1
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.1e-97 359.8 293 64.2
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 3.6e-97 359.0 300 65.3
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 5.2e-96 355.1 270 70.0
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 1.2e-95 354.0 229 79.0
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.9e-93 346.7 331 58.6
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 5.4e-93 345.1 229 75.1
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.6e-92 343.6 296 62.5
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 5.1e-91 338.6 227 74.9
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.1e-90 337.4 266 66.2
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 4.3e-90 335.5 298 64.1
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 9.6e-90 334.3 198 84.8
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 3.1e-88 329.3 229 75.1
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.2e-85 318.9 297 59.9
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.0e-83 314.3 229 70.7
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.6e-81 307.0 221 71.0
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 2.8e-81 306.2 295 60.3
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.8e-80 303.5 248 62.1
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.2e-79 300.8 225 67.6
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.5e-79 300.4 232 69.8
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 5.8e-79 298.5 232 65.9
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 9.9e-79 297.7 213 70.0
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 4.9e-78 295.4 184 81.5
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.9e-77 293.5 200 71.5
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 4.2e-77 292.4 265 61.9
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 2.3e-75 286.6 185 77.3
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 6.7e-67 258.5 191 69.6
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 9.7e-58 228.0 222 52.3
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 1.2e-55 221.1 225 52.0
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 5.0e-54 215.7 180 61.7
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 6.3e-49 198.7 227 49.3
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 5.3e-48 195.7 151 65.6
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.8e-40 170.6 265 40.4
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 4.5e-39 166.0 161 57.8
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.8e-24 117.5 285 35.8
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 2.4e-24 117.1 68 89.7
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 1.9e-21 107.5 59 91.5
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 3.6e-20 103.2 64 84.4
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.6e-15 87.8 120 48.3
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.2e-10 71.6 56 67.9
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.5e-10 71.2 43 72.1
Glyma.15G250600 Glycine max HOM05D004655 ORTHO05D215793 8.6e-06 55.5 32 75.0


User provided reference genes

Program Settings