Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.2e-239 832.8 420 100.0
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 7.2e-189 664.1 392 86.0
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 2.3e-179 632.5 416 77.4
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 1.1e-176 623.6 415 75.4
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 2.3e-174 615.9 416 73.3
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 1.2e-167 593.6 428 71.3
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 3.3e-165 585.5 422 72.7
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 2.8e-164 582.4 419 71.6
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 6.2e-164 581.3 414 71.3
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 3.4e-162 575.5 422 70.6
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 3.7e-161 572.0 414 71.7
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 4.1e-160 568.5 422 69.4
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 4.3e-157 558.5 399 71.2
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 1.1e-155 553.9 426 68.1
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.0e-155 552.0 425 67.5
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 1.3e-153 547.0 385 73.8
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 2.2e-153 546.2 401 70.3
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 2.9e-153 545.8 403 68.0
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 6.4e-153 544.7 375 73.9
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 6.4e-153 544.7 449 65.3
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 8.4e-153 544.3 428 66.4
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.9e-152 543.1 425 67.3
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 4.1e-152 542.0 399 70.2
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.9e-149 533.1 427 66.0
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 4.3e-149 531.9 427 66.0
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 4.7e-148 528.5 383 71.8
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 4.7e-148 528.5 433 64.2
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 4.7e-148 528.5 354 73.2
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 6.2e-148 528.1 411 66.9
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 8.1e-148 527.7 416 66.1
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 1.1e-147 527.3 425 65.4
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 1.4e-147 526.9 418 64.6
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 2.4e-147 526.2 428 64.7
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 3.1e-147 525.8 425 65.2
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 5.2e-147 525.0 433 64.9
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 6.9e-147 524.6 407 67.6
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 1.3e-145 520.4 382 70.2
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 3.8e-145 518.8 427 64.9
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 6.4e-145 518.1 434 62.4
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 1.4e-144 516.9 430 64.9
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 3.2e-144 515.8 433 63.7
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 4.2e-144 515.4 434 61.8
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 3.5e-143 512.3 391 68.5
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 6.0e-143 511.5 385 68.3
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.0e-142 510.8 388 68.6
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 1.3e-142 510.4 432 62.0
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 3.0e-142 509.2 433 61.4
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 3.9e-142 508.8 378 69.3
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.5e-141 506.1 410 62.7
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 2.5e-141 506.1 376 68.4
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 4.3e-141 505.4 416 62.5
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.3e-140 503.8 410 62.4
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 6.2e-140 501.5 437 61.8
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 8.1e-140 501.1 421 63.7
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 3.1e-139 499.2 396 65.9
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 6.9e-139 498.0 425 61.4
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 9.0e-139 497.7 388 66.2
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 3.4e-138 495.7 428 61.7
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 5.8e-138 495.0 421 63.2
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 2.9e-137 492.7 421 62.7
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 2.9e-137 492.7 422 62.6
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 3.8e-137 492.3 424 63.0
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 1.9e-136 490.0 376 67.6
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 1.9e-136 490.0 410 63.7
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 4.2e-136 488.8 397 65.2
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 5.4e-136 488.4 422 62.1
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 1.2e-135 487.3 413 62.2
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 1.6e-135 486.9 422 62.8
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 1.6e-135 486.9 422 62.8
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 2.1e-135 486.5 415 62.9
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 2.1e-135 486.5 379 67.3
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 2.7e-135 486.1 397 65.5
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 4.6e-135 485.3 422 61.8
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 4.6e-135 485.3 422 61.8
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 3.0e-134 482.6 423 61.5
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 6.7e-134 481.5 378 65.6
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.9e-133 479.9 390 65.6
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.3e-132 477.2 414 61.8
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 2.1e-132 476.5 433 58.7
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 6.2e-132 474.9 371 67.9
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.4e-131 473.8 414 61.4
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 2.6e-130 469.5 378 65.6
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 4.5e-130 468.8 368 67.1
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 3.8e-129 465.7 467 57.0
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 3.2e-128 462.6 385 65.2
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 1.0e-126 457.6 397 62.5
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 1.8e-126 456.8 386 61.4
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 1.8e-126 456.8 359 68.5
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 3.0e-126 456.1 383 64.0
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 4.3e-125 452.2 355 66.5
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 7.4e-125 451.4 351 67.2
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 3.7e-124 449.1 382 64.1
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 4.8e-124 448.7 331 70.4
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 1.1e-123 447.6 380 61.6
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 1.8e-123 446.8 377 63.1
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 2.6e-122 443.0 381 63.8
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 2.2e-121 439.9 399 59.4
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 5.5e-120 435.3 340 67.4
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 9.7e-117 424.5 376 60.6
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 4.8e-108 395.6 459 50.3
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 1.1e-107 394.4 405 53.6
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.0e-98 363.6 244 75.4
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 6.5e-89 332.0 300 59.7
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 7.5e-85 318.5 341 53.7
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 8.2e-84 315.1 429 44.3
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 3.8e-81 306.2 429 43.1
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 3.8e-81 306.2 429 43.1
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.2e-74 284.6 386 45.1
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.4e-67 261.2 157 85.4
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 8.1e-39 165.6 126 65.9
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.1e-38 165.2 383 34.2
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 5.8e-37 159.5 183 49.2
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 8.4e-36 155.6 123 64.2
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 5.6e-32 142.9 409 30.8
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 2.5e-24 117.5 114 56.1
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 1.8e-17 94.7 187 35.8
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 1.1e-16 92.0 151 41.7
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 9.0e-14 82.4 47 76.6
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.3e-12 78.6 47 76.6
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 1.3e-12 78.6 47 76.6
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.4e-11 75.1 156 42.9
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 2.5e-11 74.3 49 71.4
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.5e-08 65.1 46 65.2
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 1.3e-07 62.0 365 25.2
MBI05_g08284_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 1.6e-07 61.6 71 45.1
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.1e-07 61.2 103 46.6


User provided reference genes

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