Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1440 Trochodendron aralioides HOM05D007059 ORTHO05D009155 3.9e-128 461.5 227 100.0
Nn4g24915 Nelumbo nucifera HOM05D007059 ORTHO05D009155 1.2e-92 343.6 227 77.5
Thecc.02G295400 Theobroma cacao HOM05D007059 ORTHO05D009155 3.9e-88 328.6 233 76.4
Prupe.1G344600 Prunus persica HOM05D007059 ORTHO05D009155 1.1e-87 327.0 230 74.8
MBI06_g22349_MAGBIO Magnolia biondii HOM05D007059 ORTHO05D009155 2.5e-87 325.9 228 73.7
PSO782G1004 Papaver somniferum HOM05D007059 ORTHO05D009155 1.1e-85 320.5 228 72.4
GSVIVG01010187001 Vitis vinifera HOM05D007059 ORTHO05D009155 3.1e-85 318.9 227 72.7
Atru.chr11.1222 Acer truncatum HOM05D007059 ORTHO05D009155 4.0e-85 318.5 229 73.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 5.3e-85 318.2 229 72.9
PSO063G1277 Papaver somniferum HOM05D007059 ORTHO05D009155 2.0e-84 316.2 228 71.5
CiPaw.05G167400 Carya illinoinensis HOM05D007059 ORTHO05D009155 7.6e-84 314.3 228 72.8
CSS0038027 Camellia sinensis var. sinensis HOM05D007059 ORTHO05D009155 1.7e-83 313.2 227 72.2
MD16G1006000 Malus domestica HOM05D007059 ORTHO05D009155 2.4e-82 309.3 231 72.7
COL.COLO4_16620 Corchorus olitorius HOM05D007059 ORTHO05D009155 7.1e-82 307.8 231 70.6
FvH4_4g36660 Fragaria vesca HOM05D007059 ORTHO05D009155 3.5e-81 305.4 227 71.4
FAN12G0665 Fragaria x ananassa HOM05D007059 ORTHO05D009155 3.5e-81 305.4 227 71.4
Eucgr.G02016 Eucalyptus grandis HOM05D007059 ORTHO05D009155 6.0e-81 304.7 227 70.5
RcHm_v2.0_Chr4g0446371 Rosa chinensis HOM05D007059 ORTHO05D009155 6.0e-81 304.7 227 71.4
FAN07G2854 Fragaria x ananassa HOM05D007059 ORTHO05D009155 1.3e-80 303.5 227 71.4
Rhsim04G0168700 Rhododendron simsii HOM05D007059 ORTHO05D009155 3.9e-80 302.0 227 70.5
Ciclev10033522m.g Citrus clementina HOM05D007059 ORTHO05D009155 5.1e-80 301.6 231 69.3
vmacro08590 Vaccinium macrocarpon HOM05D007059 ORTHO05D009155 8.7e-80 300.8 227 69.6
Sabra10G0129500 Salix brachista HOM05D007059 ORTHO05D009155 1.3e-78 297.0 235 69.8
Potri.010G169700 Populus trichocarpa HOM05D007059 ORTHO05D009155 2.8e-78 295.8 235 69.8
Aqoxy3G04246 Aquilegia oxysepala HOM05D007059 ORTHO05D009155 1.1e-77 293.9 229 68.1
Gorai.002G167400 Gossypium raimondii HOM05D007059 ORTHO05D009155 1.1e-77 293.9 232 69.0
Actinidia38411 Actinidia chinensis HOM05D007059 ORTHO05D009155 1.8e-77 293.1 225 67.1
Gohir.D01G138500 Gossypium hirsutum HOM05D007059 ORTHO05D009155 1.8e-77 293.1 232 69.0
Lj3A851T65 Lonicera japonica HOM05D007059 ORTHO05D009155 5.3e-77 291.6 246 65.4
Lalb_Chr01g0001591 Lupinus albus HOM05D007059 ORTHO05D009155 1.5e-76 290.0 225 65.8
Manes.16G044801 Manihot esculenta HOM05D007059 ORTHO05D009155 4.5e-76 288.5 232 66.4
Gohir.A01G145900 Gossypium hirsutum HOM05D007059 ORTHO05D009155 2.2e-75 286.2 232 67.7
Sc10g0008670 Simmondsia chinensis HOM05D007059 ORTHO05D009155 2.2e-75 286.2 229 65.1
Peaxi162Scf01172g00004 Petunia axillaris HOM05D007059 ORTHO05D009155 3.8e-75 285.4 227 66.5
Nitab4.5_0007261g0020 Nicotiana tabacum HOM05D007059 ORTHO05D009155 3.2e-74 282.3 233 65.7
Nitab4.5_0002113g0150 Nicotiana tabacum HOM05D007059 ORTHO05D009155 9.3e-74 280.8 233 65.2
CAN.G624.23 Capsicum annuum HOM05D007059 ORTHO05D009155 2.1e-73 279.6 227 67.0
Duzib251G0490 Durio zibethinus HOM05D007059 ORTHO05D009155 2.7e-73 279.3 233 67.0
Sopen04g004490 Solanum pennellii HOM05D007059 ORTHO05D009155 2.7e-73 279.3 234 66.7
Lj3g0001367 Lotus japonicus HOM05D007059 ORTHO05D009155 3.5e-73 278.9 225 65.3
Haze_11738 Corylus avellana HOM05D007059 ORTHO05D009155 7.9e-73 277.7 208 71.2
Solyc04g009370.4 Solanum lycopersicum HOM05D007059 ORTHO05D009155 1.3e-72 276.9 234 66.2
PGSC0003DMG400032539 Solanum tuberosum HOM05D007059 ORTHO05D009155 1.8e-72 276.6 234 65.8
ClCG11G001160 Citrullus lanatus HOM05D007059 ORTHO05D009155 2.3e-72 276.2 231 63.6
Ca_03042_v3 Cicer arietinum L. HOM05D007059 ORTHO05D009155 8.7e-72 274.2 229 62.9
ECA234G4546 Erigeron canadensis HOM05D007059 ORTHO05D009155 1.5e-71 273.5 227 64.3
Glyma.11G104100 Glycine max HOM05D007059 ORTHO05D009155 2.5e-71 272.7 226 62.8
TPR.G21564 Trifolium pratense HOM05D007059 ORTHO05D009155 5.7e-71 271.6 230 62.6
Medtr4g074210 Medicago truncatula HOM05D007059 ORTHO05D009155 7.4e-71 271.2 229 61.6
Psat7g174240 Pisum sativum HOM05D007059 ORTHO05D009155 7.4e-71 271.2 226 63.3
Sed0015909 Sechium edule HOM05D007059 ORTHO05D009155 7.4e-71 271.2 232 62.5
MELO3C020030.2 Cucumis melo HOM05D007059 ORTHO05D009155 9.6e-71 270.8 238 60.1
HanXRQChr01g0028541 Helianthus annuus HOM05D007059 ORTHO05D009155 9.6e-71 270.8 228 64.9
Glyma.12G029100 Glycine max HOM05D007059 ORTHO05D009155 1.3e-70 270.4 226 62.8
TWI77G0260 Tripterygium wilfordii HOM05D007059 ORTHO05D009155 1.4e-69 266.9 203 69.5
Phvul.011G032300 Phaseolus vulgaris HOM05D007059 ORTHO05D009155 1.5e-68 263.5 226 63.3
VMungo1127G1389 Vigna mungo HOM05D007059 ORTHO05D009155 3.4e-68 262.3 231 61.0
AUR62017646 Chenopodium quinoa HOM05D007059 ORTHO05D009155 1.3e-67 260.4 227 62.1
AL3G33460 Arabidopsis lyrata HOM05D007059 ORTHO05D009155 5.0e-67 258.5 227 61.7
Cpa.g.sc298.2 Carica papaya HOM05D007059 ORTHO05D009155 5.0e-67 258.5 218 63.3
Lsat_1_v5_gn_4_26421 Lactuca sativa HOM05D007059 ORTHO05D009155 6.5e-67 258.1 229 62.9
AUR62012864 Chenopodium quinoa HOM05D007059 ORTHO05D009155 8.4e-67 257.7 227 60.8
BcaC09g48947 Brassica carinata HOM05D007059 ORTHO05D009155 3.2e-66 255.8 227 62.6
C01p44250 Brassica napus HOM05D007059 ORTHO05D009155 3.2e-66 255.8 227 62.6
BolC1t04385H Brassica oleracea HOM05D007059 ORTHO05D009155 3.2e-66 255.8 227 62.6
CARHR095430 Cardamine hirsuta HOM05D007059 ORTHO05D009155 3.2e-66 255.8 227 62.1
Cc11_g00200 Coffea canephora HOM05D007059 ORTHO05D009155 9.3e-66 254.2 229 63.3
Thhalv10021482m.g Eutrema salsugineum HOM05D007059 ORTHO05D009155 9.3e-66 254.2 227 61.2
HPP92_002544 Vanilla planifolia HOM05D007059 ORTHO05D009155 9.3e-66 254.2 227 63.0
HPP92_002491 Vanilla planifolia HOM05D007059 ORTHO05D009155 1.2e-65 253.8 227 63.0
Carub.0003s1980 Capsella rubella HOM05D007059 ORTHO05D009155 1.6e-65 253.4 227 62.1
Sp3g17910 Schrenkiella parvula HOM05D007059 ORTHO05D009155 1.6e-65 253.4 228 62.3
MSTRG.2053 Avicennia marina HOM05D007059 ORTHO05D009155 2.1e-65 253.1 231 61.5
Migut.E00704 Erythranthe guttata HOM05D007059 ORTHO05D009155 2.7e-65 252.7 226 60.6
EL10Ac9g22903 Beta vulgaris HOM05D007059 ORTHO05D009155 6.7e-64 248.1 227 59.0
arahy.Tifrunner.gnm1.ann1.NRJ0Q8 Arachis hypogaea HOM05D007059 ORTHO05D009155 5.7e-63 245.0 166 74.7
arahy.Tifrunner.gnm1.ann1.PC0HA4 Arachis hypogaea HOM05D007059 ORTHO05D009155 5.7e-63 245.0 166 74.7
A01p34850 Brassica napus HOM05D007059 ORTHO05D009155 9.7e-63 244.2 197 67.5
BraA01t03568Z Brassica rapa HOM05D007059 ORTHO05D009155 9.7e-63 244.2 197 67.5
CANSAT35G1437 Cannabis sativa HOM05D007059 ORTHO05D009155 2.8e-62 242.7 136 86.8
Aa31LG8G6740 Aethionema arabicum HOM05D007059 ORTHO05D009155 9.0e-61 237.7 291 49.8
unitig_27.g25281 Utricularia gibba HOM05D007059 ORTHO05D009155 7.7e-60 234.6 162 72.8
ATR0124G031 Amborella trichopoda HOM05D007059 ORTHO05D009155 1.0e-59 234.2 137 81.8
Hund08500 Selenicereus undatus HOM05D007059 ORTHO05D009155 1.3e-59 233.8 211 61.6
Oeu027905.1 Olea europaea HOM05D007059 ORTHO05D009155 2.7e-57 226.1 150 76.7
Zm00001eb259420 Zea mays HOM05D007059 ORTHO05D009155 8.8e-56 221.1 128 82.0
Migut.E00613 Erythranthe guttata HOM05D007059 ORTHO05D009155 3.3e-55 219.2 212 57.1
Pp3c2_14430 Physcomitrium patens HOM05D007059 ORTHO05D009155 1.5e-52 210.3 155 67.1
AagrBONN_evm.TU.Sc2ySwM_344.1288 Anthoceros agrestis HOM05D007059 ORTHO05D009155 2.6e-52 209.5 154 66.2
Pp3c10_16080 Physcomitrium patens HOM05D007059 ORTHO05D009155 2.6e-52 209.5 153 66.0
THA.LOC104801903 Tarenaya hassleriana HOM05D007059 ORTHO05D009155 1.3e-51 207.2 195 60.0
SMO114G0039 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 6.5e-51 204.9 125 79.2
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.1e-50 204.1 168 64.9
Dinv01917 Davidia involucrata HOM05D007059 ORTHO05D009155 1.9e-50 203.4 227 52.4
SGA_v2.0_scaffold88G27235 Striga asiatica HOM05D007059 ORTHO05D009155 4.7e-49 198.7 133 73.7
Mapoly0055s0010 Marchantia polymorpha HOM05D007059 ORTHO05D009155 3.3e-47 192.6 160 61.9
PGR031G0357 Punica granatum HOM05D007059 ORTHO05D009155 2.0e-44 183.3 227 48.0
Actinidia13703 Actinidia chinensis HOM05D007059 ORTHO05D009155 2.6e-44 183.0 167 59.9
CsaV3_5G013210 Cucumis sativus L. HOM05D007059 ORTHO05D009155 1.6e-36 157.1 187 48.1
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 2.9e-35 152.9 135 63.7
CBR_g48375 Chara braunii HOM05D007059 ORTHO05D009155 6.5e-35 151.8 123 56.9
AT3G19900 Arabidopsis thaliana HOM05D007059 ORTHO05D009155 2.1e-25 120.2 160 46.9
Actinidia14379 Actinidia chinensis HOM05D007059 ORTHO05D009155 2.0e-23 113.6 56 94.6
BolC5t33201H Brassica oleracea HOM05D007059 ORTHO05D009155 4.9e-22 109.0 84 69.0
SEGI_27177 Sequoiadendron giganteum HOM05D007059 ORTHO05D009155 1.6e-20 104.0 71 70.4
Cre01.g007050 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D009155 7.2e-18 95.1 115 44.3
SMO364G0884 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 3.0e-16 89.7 67 67.2
Cre03.g197850 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D034487 4.6e-12 75.9 171 30.4
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 1.0e-11 74.7 93 46.2
BraA05t21808Z Brassica rapa HOM05D007059 ORTHO05D040342 5.0e-11 72.4 45 80.0
MCO14G049 Micromonas commoda HOM05D007059 ORTHO05D009155 3.3e-10 69.7 101 35.6
A05p29230 Brassica napus HOM05D007059 ORTHO05D040342 4.3e-10 69.3 45 77.8


User provided reference genes

Program Settings