Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.5e-244 847.4 593 100.0
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.7e-231 806.2 552 99.8
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 7.4e-163 578.2 545 77.1
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.1e-162 576.6 547 75.0
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 5.3e-153 545.4 548 69.9
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 2.9e-151 539.7 546 67.6
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 3.0e-148 529.6 547 73.5
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.7e-146 523.9 546 68.1
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 9.1e-145 518.1 546 67.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.5e-144 515.8 548 71.4
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 6.1e-141 505.4 548 67.7
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.4e-140 504.2 552 72.6
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 3.9e-140 502.7 551 68.4
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.1e-139 501.1 550 65.6
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.4e-139 499.2 553 69.4
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 7.4e-139 498.4 548 72.4
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 7.4e-139 498.4 544 63.8
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 3.1e-137 493.0 548 67.3
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 7.0e-137 491.9 547 71.8
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-136 491.1 550 68.2
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 2.6e-136 490.0 573 71.2
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 1.0e-135 488.0 546 65.9
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.2e-135 486.9 560 63.0
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 3.8e-135 486.1 546 63.2
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 6.5e-135 485.3 550 65.8
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 6.5e-135 485.3 587 61.8
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 8.5e-135 485.0 554 68.8
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 7.2e-134 481.9 548 64.1
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 7.2e-134 481.9 545 64.6
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 9.4e-134 481.5 548 64.6
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.3e-132 476.9 550 71.6
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 3.0e-132 476.5 549 67.9
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.1e-131 474.6 536 63.6
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 2.0e-131 473.8 550 66.5
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 1.3e-130 471.1 567 63.7
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.2e-130 470.3 550 64.5
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.8e-130 469.2 568 60.4
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 4.8e-130 469.2 547 62.5
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.1e-129 468.0 546 65.2
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.4e-129 466.8 545 66.8
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 2.4e-129 466.8 558 65.1
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.6e-128 464.2 549 64.1
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.6e-128 463.4 548 65.7
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 8.5e-127 458.4 549 67.4
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.1e-126 458.0 549 67.9
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 5.5e-126 455.7 548 67.5
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.8e-124 450.7 563 64.8
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 4.0e-124 449.5 553 68.7
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 8.8e-124 448.4 558 61.3
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 2.0e-123 447.2 563 65.2
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.0e-123 447.2 546 65.4
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 3.3e-123 446.4 533 66.6
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.3e-123 446.4 546 65.0
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 7.5e-123 445.3 543 62.8
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.7e-122 443.0 547 65.6
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 4.8e-122 442.6 547 65.1
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.1e-121 441.4 550 66.4
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.4e-121 441.0 556 61.0
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.6e-120 437.6 564 65.4
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.7e-119 434.1 559 62.1
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 3.8e-119 433.0 549 65.4
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 5.0e-119 432.6 550 68.2
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 9.4e-118 428.3 551 62.6
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 9.4e-118 428.3 551 59.3
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 9.4e-118 428.3 553 68.7
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.0e-116 424.9 548 63.9
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 3.0e-116 423.3 555 65.2
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 4.0e-116 422.9 552 66.8
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.8e-116 422.2 549 64.8
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 8.3e-114 415.2 550 62.7
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.1e-113 412.9 551 56.1
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.6e-112 411.0 546 60.8
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.0e-111 408.3 551 65.9
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.0e-111 408.3 552 65.0
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.3e-111 407.9 558 60.6
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.7e-111 407.5 551 60.1
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.2e-109 401.4 593 49.9
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 6.1e-109 399.1 548 59.5
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 6.1e-109 399.1 545 65.1
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 3.4e-107 393.3 548 61.3
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 3.4e-107 393.3 545 59.8
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 2.0e-104 384.0 560 62.9
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 4.5e-104 382.9 554 58.3
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.9e-103 380.2 465 64.9
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.9e-103 380.2 551 60.6
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 3.8e-103 379.8 548 57.8
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 8.0e-101 372.1 550 61.6
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.0e-100 371.7 583 59.9
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 4.0e-100 369.8 549 58.3
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.4e-99 366.7 577 56.7
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.4e-99 366.7 555 60.7
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 2.0e-96 357.5 550 60.2
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 8.0e-93 345.5 550 58.2
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.4e-89 334.7 559 52.4
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 9.5e-86 322.0 488 55.3
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.4e-84 318.2 557 50.1
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 4.0e-84 316.6 551 57.4
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 8.9e-84 315.5 579 49.4
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 8.9e-84 315.5 562 50.0
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 3.4e-83 313.5 566 52.1
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 5.8e-83 312.8 562 56.0
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 5.8e-83 312.8 556 57.6
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 9.9e-83 312.0 569 51.0
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 3.7e-82 310.1 295 80.7
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 4.9e-82 309.7 595 49.2
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 9.2e-81 305.4 461 60.1
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.6e-80 304.7 576 54.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-79 301.6 565 55.9
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.5e-78 298.1 575 52.2
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.3e-78 296.6 454 60.8
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.2e-77 295.0 593 49.2
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 3.1e-76 290.4 553 52.3
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 8.9e-76 288.9 599 49.7
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 9.9e-75 285.4 492 60.8
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 2.3e-71 274.2 588 52.6
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 2.3e-71 274.2 163 85.9
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.3e-68 263.1 163 84.7
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 9.0e-68 262.3 168 81.5
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.2e-67 261.9 154 87.0
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.2e-64 251.9 496 49.4
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.2e-59 235.3 154 79.9
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.7e-56 224.2 329 55.3
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.9e-54 218.0 165 73.3
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 7.1e-49 199.5 445 51.2
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 3.0e-47 194.1 542 37.1
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 5.6e-46 189.9 287 51.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.1e-44 185.7 274 57.3
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.1e-41 175.6 401 49.6
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.3e-34 152.1 121 69.4
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 5.7e-30 136.7 109 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 6.3e-29 133.3 503 46.3
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.4e-27 127.5 129 61.2
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.7e-27 126.3 71 84.5
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 4.2e-25 120.6 81 69.1
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 7.2e-25 119.8 245 50.2
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.7e-24 117.9 115 67.0
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.1e-24 116.7 105 61.9
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 6.3e-21 106.7 108 61.1
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.2e-19 102.4 168 40.5
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-19 102.4 64 84.4
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.8e-18 97.4 105 58.1
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 1.2e-16 92.4 103 57.3
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.4e-14 83.2 74 66.2
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.4e-14 83.2 74 66.2
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 9.7e-14 82.8 86 58.1
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 2.2e-13 81.6 58 81.0
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.3e-13 80.1 115 60.0
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.1e-12 77.4 46 84.8
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 2.5e-09 68.2 77 58.4
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.7e-08 64.7 156 32.1
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 2.3e-07 61.6 83 48.2
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 8.8e-07 59.7 82 50.0
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 2.6e-06 58.2 82 47.6


User provided reference genes

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